PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00106.21 | ||||||||
Common Name | AMTR_s00106p00040830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | G2-like | ||||||||
Protein Properties | Length: 199aa MW: 23076.4 Da PI: 7.7598 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.4 | 2.9e-32 | 21 | 74 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv ave+LGG+ kAtPk +lelm+vkgLtl+hvkSHLQ+YR+ evm_27.model.AmTr_v1.0_scaffold00106.21 21 PRLRWTPDLHLRFVAAVERLGGEYKATPKLVLELMEVKGLTLAHVKSHLQMYRS 74 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.826 | 17 | 77 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-31 | 17 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-16 | 19 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.5E-24 | 21 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-9 | 22 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEEFMMGRKI CGRRYNRSRH PRLRWTPDLH LRFVAAVERL GGEYKATPKL VLELMEVKGL 60 TLAHVKSHLQ MYRSMKNEEG GEDHFLKRPG EVIDSSSLCG IRKRMISPTV DHHQHVHHQG 120 AFKFELGFPV QWNSYEESCA PLKELGLLDS LKKKSKTSME DEEAYKGGVD EEVMTPYRHP 180 HKVREIKEEE EESTDMKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-17 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-17 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-17 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-17 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-17 | 22 | 76 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020519662.1 | 1e-125 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | W1NYG2 | 1e-144 | W1NYG2_AMBTC; Uncharacterized protein | ||||
STRING | ERN00673 | 1e-145 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00106.21 |
Publications ? help Back to Top | |||
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