PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00106.116
Common NameAMTR_s00106p00144050, LOC18428840
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 279aa    MW: 31270.5 Da    PI: 7.3186
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00106.116genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.9e-41146223178
                                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS
                                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 
                                               +Cq++gC +dls+ak+yhrrhkvCe+hska++v++ g+++rfCqqCsrfhelsefD++krsCr+rL++h
  evm_27.model.AmTr_v1.0_scaffold00106.116 146 RCQIDGCGVDLSTAKNYHRRHKVCEFHSKASSVVAGGHKKRFCQQCSRFHELSEFDHGKRSCRKRLEDH 214
                                               6******************************************************************** PP

                                               -----S--- CS
                                       SBP  70 nerrrkkqa 78 
                                               n+rrrk+q+
  evm_27.model.AmTr_v1.0_scaffold00106.116 215 NRRRRKPQT 223
                                               ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-32144208IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.966144221IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.85E-38145225IPR004333Transcription factor, SBP-box
PfamPF031104.1E-32147220IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MLNSEWGNHN VIFSGNELRH EEGEGYQDMS HSSTPSTFAE NFPNISQAPM GSWFNHFSGQ  60
NSGNGATGNS NSSNGLARIS NSSVRFNQLG CEIVDKALFF EEEIRGEPEA CFTRDRFGLN  120
LGGRIYFPEI ENEEFQRSYQ VSCGARCQID GCGVDLSTAK NYHRRHKVCE FHSKASSVVA  180
GGHKKRFCQQ CSRFHELSEF DHGKRSCRKR LEDHNRRRRK PQTQQRKNPS HIVSSKCSSE  240
WGGMVEDTDA VSVCFEGNEM TTLHSMPCCS SLPKHAAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281472201184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203220KRSCRKRLEDHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838199.10.0protein LIGULELESS 1
TrEMBLW1NYQ00.0W1NYQ0_AMBTC; Uncharacterized protein
STRINGERN007680.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-41squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]