PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00104.42 | ||||||||
Common Name | AMTR_s00104p00109130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WRKY | ||||||||
Protein Properties | Length: 354aa MW: 39306 Da PI: 10.2199 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.4 | 9.1e-21 | 234 | 290 | 2 | 57 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 +D y+W+KY ++vkgs++ r +Y+C++a gCp+kk+ve ++++ ++v+itYeg H evm_27.model.AmTr_v1.0_scaffold00104.42 234 SDNYSWKKYSERTVKGSPYLRLFYKCATAeGCPAKKQVEWCKDNINMVTITYEGFHM 290 69************************9888*************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-22 | 227 | 291 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-19 | 232 | 291 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-18 | 233 | 294 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.759 | 234 | 294 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-18 | 235 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEKNQSSNPH LQRIEQENKN AITLAHNVLN ILSPYDPNHQ WNTPLRSVTE TKLSKVAKQT 60 INGFQRVITL LDRRGHAVFR RKPSSPSLLD RRDQNLSFPL CQKRPLYPQV SDHYFDCYGR 120 VLNNFQSKME GKRPLVSTEF ASSSMSSFRP LMPPLPAKVN DNKVISRGLP WSYVPIAPVP 180 NREHGSSNGM DGHVGSSEDG TKVAAKYLYC KRKMNIKTSI TVPAISKDLS MTPSDNYSWK 240 KYSERTVKGS PYLRLFYKCA TAEGCPAKKQ VEWCKDNINM VTITYEGFHM NHALAFEAAR 300 IPTIKPDLEL ASSSTVAPAL TPTLTPVPAL TLARARTSAP AHAPPPAPPP SPA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1NXJ2 | 0.0 | W1NXJ2_AMBTC; Uncharacterized protein | ||||
STRING | ERN00368 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 8e-29 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00104.42 |
Publications ? help Back to Top | |||
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