PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00101.99

Common Name

AMTR_s00101p00125820

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB_related

Protein Properties

Length: 1255aa MW: 139187 Da PI: 9.2096

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00101.99	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	58	91	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE e ++da +++G++ Wk++a + +R+ evm_27.model.AmTr_v1.0_scaffold00101.99 58 QWSKEELECFYDAYRKFGKD-WKKVAGAIR-NRSID 91 6***************99.******9.99965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.13E-10	53	104	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-4	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-7	58	94	IPR001005	SANT/Myb domain
CDD	cd00167	1.77E-4	59	101	No hit	No description
Pfam	PF06584	9.3E-33	690	790	IPR033471	DIRP domain
SMART	SM01135	5.1E-53	690	791	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1255 aa Download sequence Send to blast
MEDYCLKIKQ KLIMASTRKS KAANRRSSKV HEEPFDKDGV SPNKSNSRKR KFEDIGPQWS 60 KEELECFYDA YRKFGKDWKK VAGAIRNRSI DMVHALYRMN KAYLSLSEGH VSGAGLIALM 120 TDHYNLMEAS DSDRESNEGV GMSRKPHKRA RGKPRVGMSK DMDQPFPDLS KNPAISSQYG 180 CLSLLKRRRS GGSRPRAVGK RTPRFPVSYL YDKDNKAKVM APKKQEFDSE VDPDEDEVAQ 240 VALTLAEASQ RGGSPQVSRT PSKRAEHTGQ IPFQNGDRKY MEAGFVGGMR NTAVDEGCVE 300 GSLGSREADN GESARPRNHR SHLDVESVDA KQASPKMKRM LGKKLKAQGI EYNHVDDIKE 360 ECSCTDEGLN PRADNEEIDM EAAIGKSEKS SPPVVKKRSR QLISGDECSA IDALQTLADL 420 SLTCLLPSSI VESESSVQVK EENGSTDNVD KPYVQEHVPP KSQRQKSRSV VHKEKRTSSQ 480 GAETVARDNA KLGKEKSANA IISTDKSPRF RLSIDNMRKG KRKSLTGNVK PKPSKVDSEL 540 HSKDSQKAEG SIGEVKKSAT KAKRVSQIGA VPKLGKSTKP PERSSSNIDV GKVDAHFTAS 600 AAQIATMNQV SLPTKLRSRR KMDLPKTLVK KDLKSSDTSG HFAGNELGTV NIKAPNNLHS 660 HQDRVAEVKN ALVHCLSSPK LRRWCTYEWF YSAIDYPWFA QSEFVEYLNH VRLGHVPRLT 720 RVEWGVIRSS LGKTRRLSKR FLQEEREKLE KYRESVRKHY SDLRNGLREG LPADFPRPLS 780 VGQRVIACHP KTREIHDGSI LTIDGNRCRV QFDRPELGVE FVLDIDCMPL NQLENMPDAL 840 KRKNHEVSNF REDLNDIKLD VKPKEWKVGE QLGPVPSEKL DNATDGPFFV AFPDHSMNTL 900 FMQARGDTVD AVMQAKAAAN EVSFAAHQGM YNQPSSLSQI QAREADIKAL AELTRALDKK 960 EAILIELRHM NNEFGDNIKN TDLAKHSEQF KKQYAMLLVQ LNGANDQVEK ALITLRQRNT 1020 YQDTSLPPSY RSVTNTVGPG SGGLSITNQS APISLDSTSH VAEIVESSRR KARALVDAAM 1080 QVVPSLKEGN NPFDRMGEAL DLANHENCTG DSSLPAMQSS IPPPDSTNQP SAPPPQDHGV 1140 VPCKTDPETI CLPEPKREID FSEANEAQLP SELISSCVAT LLMIQTCTER QYPPAEVAQI 1200 LDDAVRSLQP CSPQNLGIYR EIQQLMGIVK NQILALVPTQ QNVPLSSGTG LSSA*

Sequence ? help Back to Top

Protein Sequence Length: 1255 aa Download sequence Send to blast

MEDYCLKIKQ KLIMASTRKS KAANRRSSKV HEEPFDKDGV SPNKSNSRKR KFEDIGPQWS  60
KEELECFYDA YRKFGKDWKK VAGAIRNRSI DMVHALYRMN KAYLSLSEGH VSGAGLIALM  120
TDHYNLMEAS DSDRESNEGV GMSRKPHKRA RGKPRVGMSK DMDQPFPDLS KNPAISSQYG  180
CLSLLKRRRS GGSRPRAVGK RTPRFPVSYL YDKDNKAKVM APKKQEFDSE VDPDEDEVAQ  240
VALTLAEASQ RGGSPQVSRT PSKRAEHTGQ IPFQNGDRKY MEAGFVGGMR NTAVDEGCVE  300
GSLGSREADN GESARPRNHR SHLDVESVDA KQASPKMKRM LGKKLKAQGI EYNHVDDIKE  360
ECSCTDEGLN PRADNEEIDM EAAIGKSEKS SPPVVKKRSR QLISGDECSA IDALQTLADL  420
SLTCLLPSSI VESESSVQVK EENGSTDNVD KPYVQEHVPP KSQRQKSRSV VHKEKRTSSQ  480
GAETVARDNA KLGKEKSANA IISTDKSPRF RLSIDNMRKG KRKSLTGNVK PKPSKVDSEL  540
HSKDSQKAEG SIGEVKKSAT KAKRVSQIGA VPKLGKSTKP PERSSSNIDV GKVDAHFTAS  600
AAQIATMNQV SLPTKLRSRR KMDLPKTLVK KDLKSSDTSG HFAGNELGTV NIKAPNNLHS  660
HQDRVAEVKN ALVHCLSSPK LRRWCTYEWF YSAIDYPWFA QSEFVEYLNH VRLGHVPRLT  720
RVEWGVIRSS LGKTRRLSKR FLQEEREKLE KYRESVRKHY SDLRNGLREG LPADFPRPLS  780
VGQRVIACHP KTREIHDGSI LTIDGNRCRV QFDRPELGVE FVLDIDCMPL NQLENMPDAL  840
KRKNHEVSNF REDLNDIKLD VKPKEWKVGE QLGPVPSEKL DNATDGPFFV AFPDHSMNTL  900
FMQARGDTVD AVMQAKAAAN EVSFAAHQGM YNQPSSLSQI QAREADIKAL AELTRALDKK  960
EAILIELRHM NNEFGDNIKN TDLAKHSEQF KKQYAMLLVQ LNGANDQVEK ALITLRQRNT  1020
YQDTSLPPSY RSVTNTVGPG SGGLSITNQS APISLDSTSH VAEIVESSRR KARALVDAAM  1080
QVVPSLKEGN NPFDRMGEAL DLANHENCTG DSSLPAMQSS IPPPDSTNQP SAPPPQDHGV  1140
VPCKTDPETI CLPEPKREID FSEANEAQLP SELISSCVAT LLMIQTCTER QYPPAEVAQI  1200
LDDAVRSLQP CSPQNLGIYR EIQQLMGIVK NQILALVPTQ QNVPLSSGTG LSSA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011620753.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020518489.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020518490.1	0.0	protein ALWAYS EARLY 3 isoform X1
TrEMBL	W1NU39	0.0	W1NU39_AMBTC; Uncharacterized protein
STRING	ERM99097	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00101.99

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]