PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00101.11

Common Name

AMTR_s00101p00038080

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bZIP

Protein Properties

Length: 327aa MW: 36136.6 Da PI: 9.0177

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00101.11	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.2	5.6e-16	271	314	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ evm_27.model.AmTr_v1.0_scaffold00101.11 271 RRQKRMIKNRESAARSRARKQAYTNELENKVMRLEEENERLKKQ 314 79***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-15	265	314	No hit	No description
SMART	SM00338	5.3E-10	267	324	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.599	269	314	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-11	271	314	No hit	No description
CDD	cd14707	5.81E-24	271	316	No hit	No description
Pfam	PF00170	3.0E-14	271	314	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	274	289	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MVSQGGGQTP QFQILGRQGS LYSLTLDEVQ NQLGDLGKPL TSMNIDELLK NVWSAEEGQA 60 LATLGEKTMG PSSSSSGLQR QSSLTLTKNL SRKTVDEVWR DIQMGQRKGE EEKKSHRRQP 120 TLGEMTLEDF LVKAGVVSES SDKTQRVTEN SNCLEGGQGI CDMASVMGMD PMGNAHNLQQ 180 QQAQWMQYQL ASSHHHQQAQ QAQQQSLMGI YGQNRNVGQG LGMGGSPLMD VGYPENQMGV 240 GSPLVGTLSD TQTPGRKRVA TGDVVERTVE RRQKRMIKNR ESAARSRARK QAYTNELENK 300 VMRLEEENER LKKQKVGISS YFQSIF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011620691.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	5e-76	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	W1NWE8	0.0	W1NWE8_AMBTC; Uncharacterized protein
STRING	ERM99009	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-35	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00101.11

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]