PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00100.58
Common NameAMTR_s00100p00149660
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 496aa    MW: 55412.2 Da    PI: 4.6733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00100.58genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000752993203455
                                              TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH  34 pskKlsKaeiLekAveYIksLq 55 
                                              +s  ++ a+iL  A+eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00100.58 299 SSSQMDRASILGDAIEYVKELQ 320
                                              566699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-117155IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-6299345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-9299338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00451420480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MNSGYFQERL RALLATKRWD YCVSIEWVGC CCGGATENGH SENGLVGSFA SKFYCRDTVL  60
PHPPTQSCHL LLASPTSIPL DSAAVGVYAQ VLLSGQARWI NNNTQPTHLT DCSEVGANTN  120
NNNTRAFIPV SGGGLVELFA CDNVSEDREV IEFVMEEQWP ANWPLEHPLH QESWQQQRQE  180
AMMISSSSSS AIKEIPFHFS SENLARNHQS FEPQSPTDLQ EDYERRYYHR HHQMLGSRQK  240
DFHHHPPWTG VPSPLDWGSY GQQQLRNNNV LFDGSADSTL SDDMMKPPIS FPNLKSTSSS  300
SQMDRASILG DAIEYVKELQ MLVKALQEEL DETTEEEQQQ QQQGNEGDGV APSATTPSSD  360
SNNHGGLNVM EERVEESSST THHLLHIPNI NNDSSDDKAQ QQQMEVQVEV NQVSAHEFNL  420
KIFCKKSSGG FARLMEAMDA LGLEVIHVSI TTYMSLVLNV FKVEDNEAIQ AEHVRDSLLE  480
LTYNPNGWPS PVHKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7548011e-100KF754801.1 Amborella trichopoda chromosome III mitochondrion, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837855.10.0transcription factor ABORTED MICROSPORES isoform X2
RefseqXP_020519435.10.0transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_020519436.10.0transcription factor ABORTED MICROSPORES isoform X1
TrEMBLW1NXT50.0W1NXT5_AMBTC; Uncharacterized protein
STRINGERN004630.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-29bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]