PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00099.26 | ||||||||
Common Name | AMTR_s00099p00039760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22727.4 Da PI: 5.2426 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 44 | 92 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k +g+Wv+eIr+p gk+ r++lg+f t+e+Aa a++aa+++l+g evm_27.model.AmTr_v1.0_scaffold00099.26 44 YRGVRRRK-WGKWVSEIREP---GKKSRIWLGSFETPEMAASAYDAAALSLKG 92 9****998.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-32 | 43 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 43 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-36 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-22 | 43 | 100 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.7E-13 | 44 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-12 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.89E-17 | 51 | 101 | No hit | No description |
PRINTS | PR00367 | 1.0E-12 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDFFNTECSQ NLTENRIEKA GAETSCTDKK QSLTRDYREE RRAYRGVRRR KWGKWVSEIR 60 EPGKKSRIWL GSFETPEMAA SAYDAAALSL KGRSARLNFP EFADKLPKPL TKDPKDIRSV 120 ALEAARSKSR EKELSGENQS FPASFPVIQA PINQYSGEFP VGSPGMWSDL AEALLLSPPV 180 FVGEESDEEE KDEGWLWSNS I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 40 | 101 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020518969.1 | 1e-145 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q9LYD3 | 1e-34 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | W1NRT2 | 1e-144 | W1NRT2_AMBTC; Uncharacterized protein | ||||
STRING | ERM99671 | 1e-145 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 7e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00099.26 |
Publications ? help Back to Top | |||
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