PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00099.14 | ||||||||
Common Name | AMTR_s00099p00029210, LOC18427694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21548.1 Da PI: 7.3832 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 2.9e-16 | 22 | 73 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++ykG+r++ +g+Wv+e+r p+ + r +lg++ ae Aa a++ a+++l+g+ evm_27.model.AmTr_v1.0_scaffold00099.14 22 PRYKGIRQRQ-WGKWVSEVRIPK----TgERLWLGTYNNAEAAATAHDTAMLCLRGP 73 68*****999.**********95....35**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-10 | 22 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.76E-25 | 22 | 84 | No hit | No description |
PROSITE profile | PS51032 | 20.85 | 23 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-16 | 23 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 23 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-23 | 23 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEQPNACRKT RLHRSKSDPC KPRYKGIRQR QWGKWVSEVR IPKTGERLWL GTYNNAEAAA 60 TAHDTAMLCL RGPIVAPKYL NFPNFSIEDS NLPNGSSNFL AGNSNFSMVG SYMNRSPTSI 120 KAAARDAGAA ADAELERRLR ETGIGCAVDS GTHGERTPLS NAPLSVEEDY LEDYLRSKGE 180 GDGLTFSIDD IEIYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 23 | 84 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006836806.1 | 1e-145 | ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | W1NYC1 | 1e-144 | W1NYC1_AMBTC; Uncharacterized protein | ||||
STRING | ERM99659 | 1e-144 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22200.1 | 7e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00099.14 |
Entrez Gene | 18427694 |
Publications ? help Back to Top | |||
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