PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00099.117
Common NameAMTR_s00099p00131560
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 360aa    MW: 41409.4 Da    PI: 7.3844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.117genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-5371361129
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdk 66 
                                               +ppGfrFhPtdeel+ +yL+kkv+ +k++l evi+evd++k+ePwdL++  ++ a  ++ewyfFs++dk
  evm_27.model.AmTr_v1.0_scaffold00099.117   7 VPPGFRFHPTDEELLYYYLRKKVTYQKFDL-EVIREVDLNKMEPWDLQErcRIGAtPQNEWYFFSHKDK 74 
                                               69****************************.99**************963433332556********** PP

                                       NAM  67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                               ky+tg+r+nrat++g+Wkatg+dk +++ + +++g++ktLvfykgrap+g+ktdW+mheyrle
  evm_27.model.AmTr_v1.0_scaffold00099.117  75 KYPTGSRTNRATSAGFWKATGRDKCIKN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 136
                                               ***************************9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-604154IPR003441NAC domain
PROSITE profilePS5100557.9467154IPR003441NAC domain
PfamPF023657.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTSSAGVPPG FRFHPTDEEL LYYYLRKKVT YQKFDLEVIR EVDLNKMEPW DLQERCRIGA  60
TPQNEWYFFS HKDKKYPTGS RTNRATSAGF WKATGRDKCI KNSYKKIGMR KTLVFYKGRA  120
PHGQKTDWIM HEYRLEENNE VNEDGWVVCR VFKKKNFFKV PQEASTSLSM EQESSNIMNH  180
GVDRESVERE GSHRGLQYNH HLHHHNQPAF DLYKPPELGL QFTNMNPSHD LQMQVQAQIQ  240
SQRPPLGYDF SGLSASSETI AKPFLQIQRP CEGESFSKNL SYQACDNGMN MNMAQCGAPQ  300
EMVEMREDNL NDWSALLVGS HLSGEDSSKA MRYSDANAAS NTINPAPLRN EIDLWNFAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-52715617167NO APICAL MERISTEM PROTEIN
1ut4_B4e-52715617167NO APICAL MERISTEM PROTEIN
1ut7_A4e-52715617167NO APICAL MERISTEM PROTEIN
1ut7_B4e-52715617167NO APICAL MERISTEM PROTEIN
4dul_A4e-52715617167NAC domain-containing protein 19
4dul_B4e-52715617167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621045.10.0protein BEARSKIN2
SwissprotQ9SV871e-122BRN2_ARATH; Protein BEARSKIN2
TrEMBLW1NVY50.0W1NVY5_AMBTC; Uncharacterized protein
STRINGERM997620.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-124NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]