PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00099.104 | ||||||||
Common Name | AMTR_s00099p00122430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21178.8 Da PI: 4.7264 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.6e-16 | 33 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr+v+eIr+p++ ++r++lg+f ++e+Aa+a++ a+ l+g evm_27.model.AmTr_v1.0_scaffold00099.104 33 FRGVRKRS-WGRYVSEIREPKK---KTRIWLGSFLSPEMAARAYDSAAFFLKG 81 8****888.**********854...6***********************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.193 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-30 | 32 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-28 | 32 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-18 | 32 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.2E-10 | 33 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.86E-26 | 33 | 91 | No hit | No description |
PRINTS | PR00367 | 2.9E-10 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MANSPVPESL AGTDFPVKRT AGNQLPGDQK TTFRGVRKRS WGRYVSEIRE PKKKTRIWLG 60 SFLSPEMAAR AYDSAAFFLK GNKSALNFPE LAEFLPRPAS NSRRDIQAAA LKAANEIFVA 120 ESFGEIEDER VEEIDLGFSR NFGDVLSLEF DGELMDFFER VADAPLMSPL RIEAEGQGNF 180 GTFTTEFYF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 22 | 90 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020519047.1 | 1e-135 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 3e-33 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | W1NYJ0 | 1e-133 | W1NYJ0_AMBTC; Uncharacterized protein | ||||
STRING | ERM99749 | 1e-134 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25810.1 | 7e-36 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00099.104 |
Publications ? help Back to Top | |||
---|---|---|---|
|