PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00096.31 | ||||||||
Common Name | AMTR_s00096p00076220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 399aa MW: 46069.6 Da PI: 6.9472 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.2e-17 | 178 | 224 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v q+G + W+ Ia+++ gR +kqc++rw+++l evm_27.model.AmTr_v1.0_scaffold00096.31 178 KGQWTLEEDRLLIHLVDQYGVRKWSQIAKMFK-GRVGKQCRERWHNHL 224 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.1e-18 | 230 | 272 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eE++llv+a+ + G++ W+ Iar+++ gRt++ +k++w+ evm_27.model.AmTr_v1.0_scaffold00096.31 230 KDTWTEEEEKLLVQAHLEIGNK-WAEIARRLP-GRTENAIKNHWN 272 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 31.11 | 173 | 228 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-31 | 175 | 271 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 177 | 226 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 179 | 231 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 8.9E-20 | 181 | 241 | No hit | No description |
CDD | cd00167 | 3.42E-14 | 181 | 224 | No hit | No description |
PROSITE profile | PS51294 | 21.335 | 229 | 279 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-16 | 229 | 277 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 232 | 279 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.54E-12 | 232 | 275 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEGGEGFMKN QNQMMEMTPP ISSYLCSGFS PKQAFDLPFY RDEFHENYIN QNPDFCNQDQ 60 KPMPHFSNLY CSNNFHPNPS EPASPNDQDF FGHFDCGCQN SSFFSDNQNF QNYKLGYGNG 120 VFACQPPSSS KEIKEERTIW ENASESFGSS LGSTEEALLA KKPKEKSNQM HKRPNLVKGQ 180 WTLEEDRLLI HLVDQYGVRK WSQIAKMFKG RVGKQCRERW HNHLRPNIKK DTWTEEEEKL 240 LVQAHLEIGN KWAEIARRLP GRTENAIKNH WNATKRRQLS RKKTRASETR QNRASSILQD 300 YIKSLNQPSP SPSPSPSITN LKTEPAAMQA VNQFLGEFHT DRSMDFYHPL FSGLPPFPFM 360 EEEGTQKLEA PPLELNNVEF EQGRKEMDLM ELISQQNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-45 | 174 | 279 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-45 | 174 | 279 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036240.2 | 7e-75 | PREDICTED: transcription factor MYB98 | ||||
TrEMBL | W1P373 | 0.0 | W1P373_AMBTC; Uncharacterized protein | ||||
STRING | ERN02363 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-64 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00096.31 |
Publications ? help Back to Top | |||
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