PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00096.106
Common NameAMTR_s00096p00160080
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 274aa    MW: 31709.7 Da    PI: 6.1911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00096.106genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-111461254
                                              HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                              r+ + ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++ I +L
  evm_27.model.AmTr_v1.0_scaffold00096.106 14 REENLMVERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGNAIDAIDYL 61
                                              667789**********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.25E-91166No hitNo description
PROSITE profilePS5088814.6021261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-151378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-151476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-91461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-121867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVMELLGLEI KREREENLMV ERRRRKKLND RLYMLRSVVP KISKMDRASI LGNAIDAIDY  60
LKELLQRIID LHNELQSMPS GSSPPSTANF HPLLTTPPPV NIHMFCARRP SLVLSTMRAL  120
DGLGLDIQQA IISYLNGFAL DVFQAEREAL RLEMIGEEED GSRMLKAAWE RLHKERKDEE  180
AYQLEMLLVE LLIYQGRYKE ALAHDCLNGE MISDPRRPLY KAAIHSILGD QELAKNSWEE  240
FKRMQDKEME FQQFTEIVES LKKEIAHAKG RDF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1P3E50.0W1P3E5_AMBTC; Uncharacterized protein
STRINGERN024380.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-60bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]