PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00095.56 | ||||||||
Common Name | AMTR_s00095p00096190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 29258 Da PI: 8.3864 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 9.6e-16 | 102 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr +++ g+Wv+eIr+p + + r++lg++ +e+Aa+a++ a +l+g evm_27.model.AmTr_v1.0_scaffold00095.56 102 PVFRGVR-HRNGGKWVCEIREPQK---KSRIWLGTYTCPEMAARAHDVAVIALRG 152 579***9.7779*********943...6***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-9 | 102 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-28 | 103 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 103 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 103 | 162 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-25 | 103 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 104 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.44E-24 | 104 | 162 | No hit | No description |
PRINTS | PR00367 | 1.8E-6 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MIATCYPSSS SSISHVRLNA LHVSNHCNYL PENETLFAKR TVSSDDGYRN SPFSKDASAA 60 TSDGFSTCSP SSSSSPLDVW SEPRHVPKRK AGRKKFKETR HPVFRGVRHR NGGKWVCEIR 120 EPQKKSRIWL GTYTCPEMAA RAHDVAVIAL RGKGATLNFA DSAWRLPAAR TTSPEDIREA 180 AQTAIEHLTV AVAAATPGTQ SRKPARPSRE LTSSVEPLFI DVEALFDMPG LITDLAEGLL 240 ITPPSFKVVS SWDDVDCHVD LDLWNQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006832878.2 | 0.0 | dehydration-responsive element-binding protein 1F | ||||
TrEMBL | W1NP51 | 0.0 | W1NP51_AMBTC; Uncharacterized protein | ||||
STRING | ERM98156 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-56 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00095.56 |
Publications ? help Back to Top | |||
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