PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00095.55 | ||||||||
Common Name | AMTR_s00095p00094910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22089.7 Da PI: 4.9077 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k g+Wv+eIr+p gk++r++lg+f t+e+Aa a++ a+++l+g evm_27.model.AmTr_v1.0_scaffold00095.55 23 IYRGVRQRK-GGKWVSEIREP---GKSTRIWLGTFATPEMAAIAYDVAALALKG 72 69******9.9*********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.01E-29 | 22 | 83 | No hit | No description |
Pfam | PF00847 | 1.3E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-19 | 23 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-30 | 23 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.654 | 23 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-27 | 23 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MNPSNLPEST SGSGTAKSGR HPIYRGVRQR KGGKWVSEIR EPGKSTRIWL GTFATPEMAA 60 IAYDVAALAL KGKHGTIFNF PDSVPDLPFP ASNSPFDIRV VAASTAEAVS LSRKSDSKLQ 120 KTDSRTTAQT TSSDPKVTGD SSKNPTFGVL GNSDMTEFMD EELIFDMPNL LVNMAEGMML 180 SPPRLDEGEG GGCGDDNLWN YKEEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 19 | 84 | 3 | 66 | ATERF1 |
3gcc_A | 4e-14 | 19 | 84 | 3 | 66 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011620445.1 | 1e-120 | ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | W1NT59 | 1e-149 | W1NT59_AMBTC; Uncharacterized protein | ||||
STRING | ERM98155 | 1e-150 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 1e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00095.55 |
Publications ? help Back to Top | |||
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