PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00095.37

Common Name

AMTR_s00095p00071020

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 206aa MW: 22699.8 Da PI: 9.9084

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.37	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00095.37 47 KQRLRWTSDLHDRFVDAIAQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.134	44	104	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-17	46	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-32	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-10	134	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MYYPKKFSTM GLVPHKPQSQ GADQLANIGV SGGSPINKSP TSGGAGKQRL RWTSDLHDRF 60 VDAIAQLGGP DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPDSPA DGTKDEKKES 120 SDILPNMESA PGAQISEALR MQMEVQKRLH EQLEGLELEP SLTDSAECTW SRTWRLGWGK 180 VIYGVQWFKT RIQLGIRQDP SSSNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-25	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011620394.1	1e-108	myb family transcription factor PHL7 isoform X1
Refseq	XP_020517984.1	1e-108	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	2e-57	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	W1NQQ4	1e-150	W1NQQ4_AMBTC; Uncharacterized protein
STRING	ERM98137	1e-150	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00095.37

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]