PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00095.34
Common NameAMTR_s00095p00059370, LOC18426127
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 448aa    MW: 49436.4 Da    PI: 8.2664
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.34genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.2e-10163202544
                                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                                              k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++
  evm_27.model.AmTr_v1.0_scaffold00095.34 163 KTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLQQLEQE 202
                                              788*************************965555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-8154206No hitNo description
SMARTSM003381.2E-7159227IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438161205IPR004827Basic-leucine zipper domain
PfamPF001701.0E-6163203IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-6163206No hitNo description
CDDcd147089.57E-22163215No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PfamPF141442.2E-32244319IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MQSFIPSYSV AYSLGTDESH SHSRVPDNGS FDHPVAFHLE DAAPLSRNSI NPKPISQTVP  60
SKSLQFGSLS KPLVSPGVAP SLDRAGSQRL SSQKGQQPNL VSLSSGHLDN WAESTMADGS  120
PRTDTSTDVD TDDKNQRYEA GHNAAIVPSD SSDRSKDKMG DQKTLRRLAQ NREAARKSRL  180
RKKAYVQQLE TSRLKLQQLE QELQRARQQG IFISSGDQSH SMNGNGALAF DMEYSRWLEE  240
HNRQINELRA AVNSHAGDNE LRISVDAVMA HYDDIFRLKG TAAKADVFHM LSGMWKTPAE  300
RCFLWLGGFR SSELLKILVP HLEPLTEQQL MGICNLQQSS QQAEEALSQG MEALQQALAE  360
TLATGSLGPS GPSGNVANYM GQMAVAMGKL GTLENFLRQA DNLRQQTLQQ LHRILTTRQS  420
ARALLAINDY FSRLRALSSL WLARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006832856.10.0transcription factor TGA2.3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLW1NU160.0W1NU16_AMBTC; Uncharacterized protein
STRINGERM981340.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-126bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]