PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00093.40
Common NameAMTR_s00093p00110710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family G2-like
Protein Properties Length: 335aa    MW: 37032.3 Da    PI: 7.8796
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00093.40genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32167222156
                                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                              k r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  evm_27.model.AmTr_v1.0_scaffold00093.40 167 KSRRCWSPELHRRFLHALQQLGGSHTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 222
                                              68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.215164224IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-28165224IPR009057Homeodomain-like
SuperFamilySSF466895.08E-18166224IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-27167222IPR006447Myb domain, plants
PfamPF002491.3E-7169220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEALEEEKRK IQVFQRELPL CLHLVTQAIN TCREQLELSN EEVPARSGYG ETSGEDPPFE  60
EFFPLKRSTS ETTQAPAGEK KRKPEDQNDK PDWLRSVQLW NSDADPSRNE DAGLNPKLGT  120
KKQRGAFQPF SREREGRAEA VSGSGNERVK VREKEREREK EGQPNRKSRR CWSPELHRRF  180
LHALQQLGGS HTATPKQIRE LMKVDGLTND EVKSHLQKYR LHTRTPAAVP ASQPINPQAP  240
QFVVVGGIWG LPEYAVPTPS PVTCGAIYAT PIRPLPPPCQ EAHQEKCSPT GPLHSDAGQG  300
VQREGGASFR DEHSASASSS SARAVSSEGN SAVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-13167220154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-13167220154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-13167220154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-13167220154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833539.20.0myb family transcription factor EFM
SwissprotQ9FPE84e-79HHO3_ARATH; Transcription factor HHO3
TrEMBLW1NSQ50.0W1NSQ5_AMBTC; Uncharacterized protein
STRINGERM988170.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54151221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.16e-78G2-like family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]