PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00093.40 | ||||||||
Common Name | AMTR_s00093p00110710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | G2-like | ||||||||
Protein Properties | Length: 335aa MW: 37032.3 Da PI: 7.8796 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.9e-32 | 167 | 222 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ evm_27.model.AmTr_v1.0_scaffold00093.40 167 KSRRCWSPELHRRFLHALQQLGGSHTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 222 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.215 | 164 | 224 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 165 | 224 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.08E-18 | 166 | 224 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-27 | 167 | 222 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 169 | 220 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEALEEEKRK IQVFQRELPL CLHLVTQAIN TCREQLELSN EEVPARSGYG ETSGEDPPFE 60 EFFPLKRSTS ETTQAPAGEK KRKPEDQNDK PDWLRSVQLW NSDADPSRNE DAGLNPKLGT 120 KKQRGAFQPF SREREGRAEA VSGSGNERVK VREKEREREK EGQPNRKSRR CWSPELHRRF 180 LHALQQLGGS HTATPKQIRE LMKVDGLTND EVKSHLQKYR LHTRTPAAVP ASQPINPQAP 240 QFVVVGGIWG LPEYAVPTPS PVTCGAIYAT PIRPLPPPCQ EAHQEKCSPT GPLHSDAGQG 300 VQREGGASFR DEHSASASSS SARAVSSEGN SAVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-13 | 167 | 220 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-13 | 167 | 220 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-13 | 167 | 220 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-13 | 167 | 220 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006833539.2 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9FPE8 | 4e-79 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | W1NSQ5 | 0.0 | W1NSQ5_AMBTC; Uncharacterized protein | ||||
STRING | ERM98817 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5415 | 12 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 6e-78 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00093.40 |
Publications ? help Back to Top | |||
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