PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00092.72 | ||||||||
Common Name | AMTR_s00092p00113360, LOC18427246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 476aa MW: 51812.8 Da PI: 7.8236 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.8 | 1.3e-36 | 85 | 226 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+L +d++sk++eWLl++a ai el+++ evm_27.model.AmTr_v1.0_scaffold00092.72 85 SGGKDRHSKVMTAKGLRDRRVRLSVSTAIQFYDLQDRLNYDQPSKAVEWLLKAASDAISELPSLqgsfpd 154 589*************************************************************876654 PP TCP 66 ..ssssaseceaesssssasnsssg.......kaaksaa.kskksqksaasalnlak.esrakararare 124 s ++ess+ ++ s++ + + + +s+ s++s s+l+l++ + r kar+ra+e evm_27.model.AmTr_v1.0_scaffold00092.72 155 kpS-------KPESSEPVSDPRSEPeaepqglNPLTGSGcCSSTSETSRGSVLSLSRsDLRVKARQRAKE 217 321.......2222222222222223445567788888889999*************999********** PP TCP 125 rtrekmrik 133 rt+++++ evm_27.model.AmTr_v1.0_scaffold00092.72 218 RTAKEKSRA 226 887766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-38 | 86 | 224 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.989 | 87 | 145 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.095 | 205 | 223 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEPDDALIAQ VSKRPKTSNG LFSKPVASKS KTKKPGHDHG ATQEEEDAEE EEEEEETKAS 60 KQAFSHGGWP HHLHTSRIIR VSRQSGGKDR HSKVMTAKGL RDRRVRLSVS TAIQFYDLQD 120 RLNYDQPSKA VEWLLKAASD AISELPSLQG SFPDKPSKPE SSEPVSDPRS EPEAEPQGLN 180 PLTGSGCCSS TSETSRGSVL SLSRSDLRVK ARQRAKERTA KEKSRASVQN LSLNAEAHDN 240 SGTSKSNNNS SNNNNGSFTD LLLDGNPSSI SATHQQNPSF MQKLHHEYLN SYMSGPTMLN 300 SSLIHPHRPQ NPNSSSCLIT TTQTQSTHLT NPSLSPPNSM TMAQFHQNPT NSSGFLGVDN 360 QELQSFSFVQ DHMAPVTSND YNFSMPSLSS SGYHRGTLQS NSSPFTHLHF QRFSPSENSN 420 TNVPFFIGTS AAAAAVAAVA ASVDNQYQAG LDARLQLCYG DGYRHSSDLK GKGKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-23 | 92 | 146 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-23 | 92 | 146 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011620778.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_011620779.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | W1NQM0 | 0.0 | W1NQM0_AMBTC; Uncharacterized protein | ||||
STRING | ERM99216 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00092.72 |
Entrez Gene | 18427246 |
Publications ? help Back to Top | |||
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