PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00091.4
Common NameAMTR_s00091p00025820, LOC18428673
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 285aa    MW: 32025.3 Da    PI: 5.427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00091.4genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.2e-151461148
                                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                            +g+WT++Ed++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00091.4 14 KGPWTADEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                                            79******************************99************97 PP
2Myb_DNA-binding44.82.9e-1470111447
                                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                              ++ E++  +d ++ lG++ W++Ia++++ gRt++++k++w+++
  evm_27.model.AmTr_v1.0_scaffold00091.4  70 LSESEEQMVIDIHAYLGNR-WSKIAAHLP-GRTDNEIKNYWNTH 111
                                             5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.046961IPR017930Myb domain
SuperFamilySSF466899.38E-2611108IPR009057Homeodomain-like
SMARTSM007177.5E-121363IPR001005SANT/Myb domain
PfamPF002495.3E-141461IPR001005SANT/Myb domain
CDDcd001672.24E-81661No hitNo description
PROSITE profilePS5129424.06662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2464116IPR009057Homeodomain-like
SMARTSM007179.7E-1366114IPR001005SANT/Myb domain
PfamPF002498.1E-1370111IPR001005SANT/Myb domain
CDDcd001677.34E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAD EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEQMVID IHAYLGNRWS KIAAHLPGRT DNEIKNYWNT HIKKKLRKMG  120
IDPVTHKPIA SSSPATTEEK PADSLSKPEE TPLNLALPET QEKAQSNKSE LAEEETSINS  180
GAPLVKPTFS DKSPEFFCTD EVPLIEPHEI MVPCASTSSC CSSSSMWNNE ESPLHLPDIM  240
WQMHGIEDLE EWDWNSDLCS ISSNGGADPF GQYQRTLFQF DQML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838010.10.0protein ODORANT1
SwissprotQ9C7U75e-87MYB20_ARATH; Transcription factor MYB20
TrEMBLW1NYY30.0W1NYY3_AMBTC; Uncharacterized protein
STRINGERN005790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-92myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]