PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00089.56 | ||||||||
Common Name | AMTR_s00089p00102760, LOC18429955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 404aa MW: 44647.3 Da PI: 8.4597 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 242 | 291 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ kl+g evm_27.model.AmTr_v1.0_scaffold00089.56 242 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAALAYDTAAYKLRG 291 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.55E-33 | 241 | 301 | No hit | No description |
PROSITE profile | PS51032 | 23.367 | 242 | 299 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-23 | 242 | 300 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-36 | 242 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-32 | 242 | 300 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 243 | 254 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 243 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 265 | 281 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MEEQAFEIAG YVQKELPCYF HAMAGKSLIA DPLVLNVIAE SACRGANRSD EQFPNSYLMG 60 KANQSSLCPT TGIGKEKVPE QPINSISAIL RFLNSNGVSS TKVNSINPNL ESNQTQLGLN 120 DPPSSSPSSS TTPSAPVLRL QIPETLQDSQ VVKNQSCEPI TTPNLDLCQI ELQLFRKQQE 180 LGLGWLQTHH RFASSPSNVY HLQSKQSNGG HGQLPNFLGP KTQRMKYMGR PLEGPKSSSP 240 KLYRGVRQRH WGKWVAEIRL PRNRTRVWLG TFDTAEEAAL AYDTAAYKLR GDYAHLNFPD 300 LKHRLKANSN GSSSHSATAA LLDAKLQAFN KSLTPQKETQ KVIDQPKLPL HQDTAITAPS 360 NQVKKETHQE SPSKSDWSDM DEVLLSRMPS LDLETIWDEL PAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 241 | 299 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006840184.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | W1P2I4 | 0.0 | W1P2I4_AMBTC; Uncharacterized protein | ||||
STRING | ERN01859 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 4e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00089.56 |
Entrez Gene | 18429955 |
Publications ? help Back to Top | |||
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