PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00087.6 | ||||||||
Common Name | AMTR_s00087p00039380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 171aa MW: 19582.1 Da PI: 4.9541 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 10 | 34 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ I+++++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00087.6 10 RWAQISNYLP-GRTDNEIKNYWNSHL 34 4*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.828 | 1 | 38 | IPR017930 | Myb domain |
CDD | cd00167 | 2.08E-7 | 6 | 34 | No hit | No description |
SuperFamily | SSF46689 | 4.81E-8 | 9 | 41 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-12 | 10 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-7 | 10 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MPIFVHLFIR WAQISNYLPG RTDNEIKNYW NSHLKKGAWK KEQIEKSWTL KAQERTPSNS 60 IVPEEQHIIY EEPKLFQGEV GPNYNFNNLY FGDSQVVLNE NSNIYNQPLG GVVHENHLIA 120 MTPWVPPDDG PLQMESIIFP QLNPLDVFHP GMSMGLQGLE AYNSLNNGEF * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006840883.2 | 1e-115 | transcription factor WER | ||||
TrEMBL | W1P3P9 | 1e-121 | W1P3P9_AMBTC; Uncharacterized protein | ||||
STRING | ERN02558 | 1e-122 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.2 | 6e-12 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00087.6 |
Publications ? help Back to Top | |||
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