PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00083.33
Common NameAMTR_s00083p00123850, LOC18430642
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 354aa    MW: 40147.8 Da    PI: 7.4475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00083.33genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-161562148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g W+++Ede+l + ++q+G g+W+++++  g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00083.33 15 KGLWSPQEDEKLMKHITQFGIGCWSSVPKQAGLQRCGKSCRLRWINYL 62
                                             678*******************************************97 PP
2Myb_DNA-binding41.23.7e-1368111146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              rg+++ +E+ +++ +++ lG++ W+ Ia+ ++ gRt++++k+ w++
  evm_27.model.AmTr_v1.0_scaffold00083.33  68 RGSFSHQEENIIISLHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 111
                                              899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-25965IPR009057Homeodomain-like
PROSITE profilePS5129416.9321062IPR017930Myb domain
SuperFamilySSF466891.14E-2713109IPR009057Homeodomain-like
SMARTSM007172.5E-101464IPR001005SANT/Myb domain
PfamPF002495.5E-131562IPR001005SANT/Myb domain
CDDcd001674.25E-91862No hitNo description
PROSITE profilePS5129424.15763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2566118IPR009057Homeodomain-like
SMARTSM007172.5E-1167115IPR001005SANT/Myb domain
PfamPF002494.0E-1268112IPR001005SANT/Myb domain
CDDcd001671.62E-770110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRPSSTYNK QKLRKGLWSP QEDEKLMKHI TQFGIGCWSS VPKQAGLQRC GKSCRLRWIN  60
YLRPDLKRGS FSHQEENIII SLHAVLGNRW SQIAAQLPGR TDNEIKNLWN SCLKKKLIQQ  120
GIDPNTHKTL TTNDPSENQV LTKNQQNQKL QSISMTETSQ LPINSFTNNP NPPSLSLSKK  180
TISETPISIS ANCLNVNPHS VTDPYSNWVP LFHRDFVLSH QIQAEVREDS GFLPVTESNY  240
CEKSTSMVIE DNFSGKLDKF VTPSGSWTCT KGIDQRCDNG RLTYSNSSSS SSNGGNKDFQ  300
SENMHFEGFK WPEYFELSFS ENLNSWQKLQ CSDDYSSLSE DQTDPKFDLF EQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840854.10.0transcription factor MYB86
TrEMBLW1P4E60.0W1P4E6_AMBTC; Uncharacterized protein
STRINGERN025290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-76myb domain protein 55
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]