PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00082.23 | ||||||||
Common Name | AMTR_s00082p00116910, LOC18426766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 569aa MW: 63084.7 Da PI: 6.0479 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.6 | 2.2e-48 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkky 68 lppGf FhPtd elv++yLk k+ gk+ ++ i+evd+yk+ePwdLp+ + + ++w+fF+ r kky evm_27.model.AmTr_v1.0_scaffold00082.23 16 LPPGFGFHPTDVELVSYYLKGKILGKNRDT---IPEVDLYKHEPWDLPEksDMPFRCSSWHFFCARGKKY 82 79*************************665...***************6234444777************ PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+r+nratk+g+Wkatgkd++v+ +++++g+kktLvf+ grap+g++tdW+mhey+l evm_27.model.AmTr_v1.0_scaffold00082.23 83 PNGSRTNRATKAGFWKATGKDRNVKF-RRRTIGTKKTLVFHAGRAPSGVRTDWLMHEYHL 141 *************************9.8999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-55 | 6 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.157 | 16 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-25 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MTFEYMGNTN GNIASLPPGF GFHPTDVELV SYYLKGKILG KNRDTIPEVD LYKHEPWDLP 60 EKSDMPFRCS SWHFFCARGK KYPNGSRTNR ATKAGFWKAT GKDRNVKFRR RTIGTKKTLV 120 FHAGRAPSGV RTDWLMHEYH LAKEECEAAA PGMKDAFVLC RVFKNDESGT SDDDGLEQNE 180 RHVAAQPTEG RSMNTPYGNS YDLVSDDLSI AMYLNSEAAF IPASGEYTSN QRVDPNPHIL 240 ELNDGVASSP LRIEDFPEIP FNLGIGDQST FFDHFSTSDP LSEHDIIEEI YDAITSASLS 300 GPSSTLPGDH GFTPSAYSEL YNPQVPDNVV DREEPEINVR YWPSGPESEI PGPRSRLQMH 360 KMQNRSTNRA ETYSYNKGAV GVLNGSGYSG SESSCDLQEQ LLLLEEFNSG LGNESKEIPM 420 SEPSLAPLGC YQVSAIFCKD EEPNSDQLIR EAHSYQTVTE MRDIFISDGS PFRKDSGSTV 480 AKVKSRQKGR KARRPPKENV SLTKKQVKKI IGDSGGQSNV EGFHSVSQRS VLSSLGACII 540 GAMLLFVYAY FMLCKIRKFV TGLCILGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-45 | 15 | 163 | 14 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006833474.1 | 0.0 | NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_011620621.1 | 0.0 | NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_011620623.1 | 0.0 | NAC domain-containing protein 86 isoform X1 | ||||
TrEMBL | W1NSK1 | 0.0 | W1NSK1_AMBTC; Uncharacterized protein | ||||
STRING | ERM98752 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 3e-66 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00082.23 |
Entrez Gene | 18426766 |
Publications ? help Back to Top | |||
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