PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00080.55 | ||||||||
Common Name | AMTR_s00080p00130620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | B3 | ||||||||
Protein Properties | Length: 160aa MW: 18453.4 Da PI: 7.8311 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.4e-10 | 48 | 133 | 2 | 75 |
EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgry 59 k+ltpsd+ + +rl lpk+ +++ ++e++ +l d++gr W++ ++y+k+s++y evm_27.model.AmTr_v1.0_scaffold00080.55 48 HKTLTPSDTEPHlNRLALPKTQVNNQifpllteaeirRVEEEGGLELCAFDKEGRAWNLIFKYWKSSQTY 117 699******9999**********777*******999966778999************************* PP EE-TTHHHHHHHHT-- CS B3 60 vltkGWkeFvkangLk 75 vl + W ++v ng + evm_27.model.AmTr_v1.0_scaffold00080.55 118 VLIDEWMGMVVRNGWR 133 **********999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 9.8E-9 | 31 | 127 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 8.0E-16 | 43 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-13 | 45 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-8 | 49 | 158 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MKMKMKEEKE EDRRNLLMLA ECACNVSRGK WLATMLQLGA QALQPVCHKT LTPSDTEPHL 60 NRLALPKTQV NNQIFPLLTE AEIRRVEEEG GLELCAFDKE GRAWNLIFKY WKSSQTYVLI 120 DEWMGMVVRN GWRSHTDALT VWCFRHGFNG SLCFVILNH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1P4X4 | 1e-116 | W1P4X4_AMBTC; Uncharacterized protein | ||||
STRING | ERN04942 | 1e-116 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 2e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00080.55 |
Publications ? help Back to Top | |||
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