PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00080.3 | ||||||||
Common Name | AMTR_s00080p00025480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YB | ||||||||
Protein Properties | Length: 249aa MW: 27726.7 Da PI: 6.9233 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 184.2 | 1.1e-57 | 93 | 189 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwal 71 vreqdrflPian+srimkk+lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+ evm_27.model.AmTr_v1.0_scaffold00080.3 93 VREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAM 163 69********************************************************************* PP NF-YB 72 atlGfedyveplkvylkkyrelegek 97 +tlGfedy++plkvyl+ yre+eg++ evm_27.model.AmTr_v1.0_scaffold00080.3 164 STLGFEDYIDPLKVYLQMYREMEGDS 189 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-56 | 88 | 215 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.99E-41 | 96 | 208 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-28 | 99 | 163 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.7E-20 | 127 | 145 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 130 | 146 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.7E-20 | 146 | 164 | No hit | No description |
PRINTS | PR00615 | 2.7E-20 | 165 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MALGFRFICF LSRLLILRFL LVVTCMALGL QFVSFYSWAL VRVSDRVSPL FPEDSLYFAI 60 FHGLKGFAMA DASASPGSPE SPNSGEQSPH SNVREQDRFL PIANISRIMK KALPPNGKIA 120 KDAKETVQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMSTLGFED YIDPLKVYLQ 180 MYREMEGDSK GTKGGDQSAK KESAGVQAGS STQQVSHQGS FNQGMNYMRS QHVYFDVLKI 240 LTNEMNID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 2e-46 | 94 | 184 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 2e-46 | 94 | 184 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR232273 | 1e-35 | KR232273.1 Vernicia fordii nuclear transcription factor Y subunit B-5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011622921.1 | 1e-118 | nuclear transcription factor Y subunit B-1 | ||||
Refseq | XP_011622922.1 | 1e-118 | nuclear transcription factor Y subunit B-1 | ||||
Refseq | XP_011622923.1 | 1e-118 | nuclear transcription factor Y subunit B-1 | ||||
Refseq | XP_020522171.1 | 1e-118 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | P25209 | 2e-73 | NFYB_MAIZE; Nuclear transcription factor Y subunit B | ||||
TrEMBL | W1PCW5 | 0.0 | W1PCW5_AMBTC; Uncharacterized protein | ||||
STRING | ERN04890 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 3e-73 | nuclear factor Y, subunit B10 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00080.3 |
Publications ? help Back to Top | |||
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