PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00079.58
Common NameAMTR_s00079p00140660, LOC18432143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 294aa    MW: 33812.8 Da    PI: 7.8105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00079.58genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-172774148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             rg+WT eEd ll+++++ +G g+W+  a++ g++Rt+k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00079.58 27 RGPWTLEEDTLLIHYIACHGEGRWNMLAKYSGLKRTGKSCRLRWLNYL 74
                                             89********************************************97 PP

2Myb_DNA-binding543.9e-1780123146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00079.58  80 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123
                                              7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.122274IPR017930Myb domain
SuperFamilySSF466894.49E-3125121IPR009057Homeodomain-like
SMARTSM007174.5E-142676IPR001005SANT/Myb domain
PfamPF002493.0E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-232881IPR009057Homeodomain-like
CDDcd001671.14E-102974No hitNo description
PROSITE profilePS5129426.46375129IPR017930Myb domain
SMARTSM007171.1E-1579127IPR001005SANT/Myb domain
PfamPF002495.2E-1680123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2482128IPR009057Homeodomain-like
CDDcd001678.29E-1284123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MACDSGSSGS KERSSSKYEE EGGDLRRGPW TLEEDTLLIH YIACHGEGRW NMLAKYSGLK  60
RTGKSCRLRW LNYLKPDIKR GNLTPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY  120
WRTRVQRQAR QLQCDANSAR FRETITCSWM PKLQKRENSS SSIPFSHLNP SIPTQSPQET  180
SQHIQPFLTH TNNPDQDQLS LEILRSSDSI MTTQFPSSEV QFNHEFFGRP ISQPFLKNYC  240
SDNYGTGSTS IMAKKSAPIN NCTISEQFMA QNNWVVNVSD DLWSMDEMWQ SVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27241294108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842316.10.0transcription factor MYB62 isoform X1
SwissprotQ10MB42e-76MYB2_ORYSJ; Transcription factor MYB2
TrEMBLW1P8Q80.0W1P8Q8_AMBTC; Uncharacterized protein
STRINGERN039910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.14e-73myb domain protein 116
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]