PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00079.33
Common NameAMTR_s00079p00099620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 316aa    MW: 35152.5 Da    PI: 9.4942
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00079.33genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.42.3e-5651301128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                              lppGfrFhPtdeel+++yL++kv+++++++ ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+t
  evm_27.model.AmTr_v1.0_scaffold00079.33   5 LPPGFRFHPTDEELITFYLARKVSDRSFRA-RAIADVDLNKSEPWDLPGKATMGEKEWYFFSLRDRKYPT 73 
                                              79***************************9.89***************888899**************** PP

                                      NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              g r+nrat++gyWk+tgkdke+++ +g lvg+kktLvfykgrapkgekt+Wvmheyrl
  evm_27.model.AmTr_v1.0_scaffold00079.33  74 GLRTNRATDAGYWKTTGKDKEIFN-SGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130
                                              ************************.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-644151IPR003441NAC domain
PROSITE profilePS5100559.4595151IPR003441NAC domain
PfamPF023655.5E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEGSLPPGFR FHPTDEELIT FYLARKVSDR SFRARAIADV DLNKSEPWDL PGKATMGEKE  60
WYFFSLRDRK YPTGLRTNRA TDAGYWKTTG KDKEIFNSGV LVGMKKTLVF YKGRAPKGEK  120
TNWVMHEYRL QTKFVSRPSK DEWVVSRVFQ KSSGGKKQHA TNSAPCDNTA IITEPGDMGS  180
LDSDCFSQPN ENISELNRLV SSSQSFSNTN NNSHININST SGNNPIGAQL NPNMSMNMNW  240
LFKRDNPVQP PSLLNLNFPT SNSILRALQL NMMNSYQQVG ANNGGVIAPG LATPEPTFNA  300
NPSAPMDIES LWNGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B1e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A1e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B1e-57415716171NO APICAL MERISTEM PROTEIN
3swm_A1e-57415719174NAC domain-containing protein 19
3swm_B1e-57415719174NAC domain-containing protein 19
3swm_C1e-57415719174NAC domain-containing protein 19
3swm_D1e-57415719174NAC domain-containing protein 19
3swp_A1e-57415719174NAC domain-containing protein 19
3swp_B1e-57415719174NAC domain-containing protein 19
3swp_C1e-57415719174NAC domain-containing protein 19
3swp_D1e-57415719174NAC domain-containing protein 19
4dul_A1e-57415716171NAC domain-containing protein 19
4dul_B1e-57415716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020521632.10.0NAC domain-containing protein 92 isoform X2
TrEMBLW1P8N10.0W1P8N1_AMBTC; Uncharacterized protein
STRINGERN039660.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.17e-92NAC domain containing protein 58
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]