PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00079.33 | ||||||||
Common Name | AMTR_s00079p00099620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 35152.5 Da PI: 9.4942 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.3e-56 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 lppGfrFhPtdeel+++yL++kv+++++++ ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+t evm_27.model.AmTr_v1.0_scaffold00079.33 5 LPPGFRFHPTDEELITFYLARKVSDRSFRA-RAIADVDLNKSEPWDLPGKATMGEKEWYFFSLRDRKYPT 73 79***************************9.89***************888899**************** PP NAM 71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g r+nrat++gyWk+tgkdke+++ +g lvg+kktLvfykgrapkgekt+Wvmheyrl evm_27.model.AmTr_v1.0_scaffold00079.33 74 GLRTNRATDAGYWKTTGKDKEIFN-SGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130 ************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-64 | 4 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.459 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEGSLPPGFR FHPTDEELIT FYLARKVSDR SFRARAIADV DLNKSEPWDL PGKATMGEKE 60 WYFFSLRDRK YPTGLRTNRA TDAGYWKTTG KDKEIFNSGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL QTKFVSRPSK DEWVVSRVFQ KSSGGKKQHA TNSAPCDNTA IITEPGDMGS 180 LDSDCFSQPN ENISELNRLV SSSQSFSNTN NNSHININST SGNNPIGAQL NPNMSMNMNW 240 LFKRDNPVQP PSLLNLNFPT SNSILRALQL NMMNSYQQVG ANNGGVIAPG LATPEPTFNA 300 NPSAPMDIES LWNGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020521632.1 | 0.0 | NAC domain-containing protein 92 isoform X2 | ||||
TrEMBL | W1P8N1 | 0.0 | W1P8N1_AMBTC; Uncharacterized protein | ||||
STRING | ERN03966 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 7e-92 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00079.33 |
Publications ? help Back to Top | |||
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