PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00079.2
Common NameAMTR_s00079p00020610
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 362aa    MW: 40006.1 Da    PI: 4.4143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00079.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-20116167256
                                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                             +ykGVr+++ +g+W+AeIrdps+ g   r++lg++ ++eeAaka+++a+kk+eg+
  evm_27.model.AmTr_v1.0_scaffold00079.2 116 KYKGVRQRR-WGKWAAEIRDPSKKG--VRIWLGTYNSEEEAAKAYERAAKKMEGA 167
                                             8*****998.**********97744..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-14116166IPR001471AP2/ERF domain
PROSITE profilePS5103221.272116175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-24116168IPR001471AP2/ERF domain
SMARTSM003809.8E-28116181IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-18116167IPR016177DNA-binding domain
CDDcd000181.54E-24116164No hitNo description
PRINTSPR003674.8E-9117128IPR001471AP2/ERF domain
PRINTSPR003674.8E-9140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MARRVRILCD DPDATDSDSS SEEEGAMRNP IKTSKKRVIQ EIYIPFSCSV PVIEIESSAD  60
SSFRERNKDS SIRERNKLES GSTERNRMES SSRERNKLES SSRERNSVKS SRKPGKYKGV  120
RQRRWGKWAA EIRDPSKKGV RIWLGTYNSE EEAAKAYERA AKKMEGAGSS SASLSCVSED  180
EQYSLSSPSS VLDNVSTSNS SICGAESSSI RKESGNGLSK GRGKGLSKEK ENGLSKEREE  240
NSSTPETMGG GFLQEDAIAS MDDEGFKKEL AAYNNDLFVV EELGQVLEMG FDEMGIDEID  300
SGFDEMVIDE IEPLIFGVEN EGDVPSLDFD FDFDSEPIAE WDFEPHPVPL PLPLPLSLPL  360
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17117167353ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842260.20.0ethylene-responsive transcription factor ERF094
RefseqXP_020521652.10.0ethylene-responsive transcription factor ERF094
TrEMBLW1PAA40.0W1PAA4_AMBTC; Uncharacterized protein
STRINGERN039350.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-12ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]