PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00078.97
Common NameAMTR_s00078p00123870, LOC18431967
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 601aa    MW: 65169.1 Da    PI: 6.4695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00078.97genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30251310159
                                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                              ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r aed +++++tYeg+Hnh+
  evm_27.model.AmTr_v1.0_scaffold00078.97 251 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRYAEDMSILITTYEGTHNHP 310
                                              58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-31236312IPR003657WRKY domain
SuperFamilySSF1182906.93E-27244312IPR003657WRKY domain
PROSITE profilePS5081128.392246312IPR003657WRKY domain
SMARTSM007747.7E-35251311IPR003657WRKY domain
PfamPF031061.7E-26252310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDVLKRSFHR GTEDVEDEKG VGLHGDGDLT DFKVSSKSEK MGIGRSDSKP TSPNQTDSSN  60
QEDQIISAKA EMGEVREENE RLKTILAQIA KDYQSLQMHF FDIVHQEQIM IKPESEVSNH  120
KTEEPELVSL SLGTTNSSTI HKKEEKTSNF EKGKEEEEDR QVDEGLSLGL DCRFNQPHRN  180
PIEISAKVEI PERESPENIS EESKEEEINT EAWHPNTLLK TSRGPEDEIS QQAHVKKARV  240
SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PACPVRKQVQ RYAEDMSILI  300
TTYEGTHNHP LPISATAMAS TTSAAASMLN SGPLATRPSS SAALQSLAFN LTDPSSRANP  360
NKPFFFPTPT ISSTPSYPTI TLDLTQPPSR HFFSPPSNLH QNQRYPTNSF STLNFSSEQS  420
NIMTPNPWPN SSYFNSASQS QFYNKGHHMV PSTFVRTPQD HFYPSLLQKP SSVPSTSSSL  480
PLTDSIAAAT KAITSDPNFR SALAAAITSI VSGGHGPPQG GGDILSFSQK AGVEGPIQAI  540
PYHGSGTVGA CGSSFMSQPS GSGSGSGSQA GGLTFLSQSM PFGSSKSASA SPVVNRDHIS  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19238312174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842141.10.0probable WRKY transcription factor 72
TrEMBLW1P8930.0W1P893_AMBTC; Uncharacterized protein
STRINGERN038160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-67WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]