PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00078.162 | ||||||||
Common Name | AMTR_s00078p00171140, LOC18432033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 23946.1 Da PI: 9.2064 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.6 | 2.2e-32 | 139 | 197 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ evm_27.model.AmTr_v1.0_scaffold00078.162 139 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 197 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 124 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-28 | 131 | 198 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 134 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 139 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 140 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MNQGMFQGDE GLVTSSMGFQ GHEPTSWGLS GNGYHGLFRA MNGLSAMAPP LMLDANGEGE 60 SGCNLFTVAQ SNGAIGPAPL QKMKTSLWSL GEEEGLGCRR AASEDHLGAS AIKMKKVKVR 120 RKVREPRFCF KTMSDIDVLD DGYKWRKYGQ KVVKNTQHPR SYYRCTQDNC RVKKRVERLA 180 EDPRMVITTY EGRHVHSPSH DTENSPTSSH INFFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 130 | 196 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 130 | 196 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | KVRRKVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006842206.1 | 1e-163 | WRKY transcription factor SUSIBA2 | ||||
TrEMBL | W1P8E8 | 1e-162 | W1P8E8_AMBTC; Uncharacterized protein | ||||
STRING | ERN03881 | 1e-163 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 2e-52 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00078.162 |
Entrez Gene | 18432033 |
Publications ? help Back to Top | |||
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