PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00078.140
Common NameAMTR_s00078p00156890, LOC18432010
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YC
Protein Properties Length: 129aa    MW: 14199.6 Da    PI: 10.9679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00078.140genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.36.9e-138862198
                                     NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifd 90
                                              +P  r+kki+k d+d+k++ +ea  l+s a  lf+ +l+  s   a e+kr+tl    + aav+  + +  
  evm_27.model.AmTr_v1.0_scaffold00078.140  8 FPPGRVKKIVKLDKDIKKVNSEALFLISSATSLFLQHLAESSAKVAMEKKRKTLGLEHLRAAVKGHVpTRV 78
                                              7889***********************************************************96552678 PP

                                     NF-YC 91 flvdivpr 98
                                              fl d  p+
  evm_27.model.AmTr_v1.0_scaffold00078.140 79 FLADSLPK 86
                                              99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-19771IPR009072Histone-fold
SuperFamilySSF471135.69E-16772IPR009072Histone-fold
PfamPF008089.3E-17870IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MADSAPVFPP GRVKKIVKLD KDIKKVNSEA LFLISSATSL FLQHLAESSA KVAMEKKRKT  60
LGLEHLRAAV KGHVPTRVFL ADSLPKPLAK EKRLKRERGG ARAEKELHSG ERRIEDFFKK  120
QGPGTDMG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842184.11e-86chromatin accessibility complex protein 1
TrEMBLW1P8583e-85W1P858_AMBTC; Uncharacterized protein
STRINGERN038594e-86(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP94721213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-25nuclear factor Y, subunit C13
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]