PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.88
Common NameAMTR_s00077p00103880
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 154aa    MW: 17362.5 Da    PI: 6.1179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.88genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27665259
                                             --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59
                                             +D ++WrKYGqKe+ +s+fp+sYYrC+++  gC++kk v+r ++dp+++e+tY g+H ++
  evm_27.model.AmTr_v1.0_scaffold00077.88  6 EDSFTWRKYGQKEILNSKFPKSYYRCAHRttGCEAKKYVQRLDNDPQIIEVTYLGRHICQ 65
                                             79**************************999**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.115167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-26365IPR003657WRKY domain
SuperFamilySSF1182902.35E-24465IPR003657WRKY domain
SMARTSM007743.8E-34566IPR003657WRKY domain
PfamPF031061.7E-24665IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDTLPEDSFT WRKYGQKEIL NSKFPKSYYR CAHRTTGCEA KKYVQRLDND PQIIEVTYLG  60
RHICQASRPE FQAEMRAKFE GTIHNSEKVE EIPTASVAKS SETLMTTGFK SGKMETREGS  120
ESPILDYTDV MFTGPSGGIN MDSIFSCSPK HED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-177621874Disease resistance protein RRS1
5w3x_D3e-177621874Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842506.31e-112WRKY transcription factor 55 isoform X1
TrEMBLW1P9B91e-112W1P9B9_AMBTC; Uncharacterized protein
STRINGERN041811e-113(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-25WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]