PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.66
Common NameAMTR_s00077p00082680
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 875aa    MW: 95917 Da    PI: 7.1206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.66genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18323422198
                                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHH CS
                                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWk 66 
                                              f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G  
  evm_27.model.AmTr_v1.0_scaffold00077.66 323 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDAKGKEWVFQFRFwpNNNSRMYVLE-GVT 391
                                              99**************************555566778***************9989999999***9.*** PP

                                              HHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                       B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                 ++ +L++gD+v+F++++  e++lv+++++
  evm_27.model.AmTr_v1.0_scaffold00077.66 392 PCIQSMQLQAGDTVTFSRID-PERKLVMGFRK 422
                                              *****************887.66666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-31315432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-20320423IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-22321422No hitNo description
SMARTSM010191.2E-21323423IPR003340B3 DNA binding domain
PfamPF023624.3E-16323422IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941323424IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781578628IPR011124Zinc finger, CW-type
PfamPF074961.0E-9583625IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MNLTCGTTTT SKWREGWTLR SGGVADLCDT CGSAYEQRIF CDIFHSKETG WRECRYCNKH  60
VHCGCIVSKS SIEMLDSGGV SCIKCSKSPT LPSIDSQVQQ MPMLQSTQGV LSLPARTSKV  120
AQTNDSMKEE GLLPLPAQSD NTNGSLGKIK GEQGTSGGDS RSMSLKVTSE VPVSSPQLTK  180
RDSHTDVLSD RERETGDSLN ACLSISLGAC NTGDIVEANS MPGTPNLAFP VPNVTVDGKE  240
LNRATPSYQQ GQRSRHLLPK PPHTSFNNGS DSSKDTVPHI RIARPPGDGR GRNQLLPRYW  300
PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL  360
KIQDAKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPERKLVMGF  420
RKATSTTSMQ ETHISPSTNC VVSQETYVSG VIENLSSIGG YSDLLHSIKG NVDPLNTLTE  480
QLNSSDTDWY KTEKHGSRST VQVLEKKRTR NIGSKSKRLL IDHEEALELK VTWEEAQDLL  540
RPPPSVRPNF VMIEDYEFEE YEEPPVFGKR TVFTARQSGG YDQWAQCDNC YRWRKLPFDA  600
LIPPRWTCTD NAWDPRRCLC SAPEEVNIEE LEGLLRQRID SKRRKVTEAR KPQREISGLD  660
ALATVAALGQ DEGSAAGPSV APTTKHPRHR PGCTCIVCIQ PPSGKGPKHK PTCTCNVCMT  720
VKRRFKTLMM RRKKRQSERE AETARKKQSG LDGDCGGPEG NRGGPEVESG GLEGEHGGPE  780
ELEGVGSVGG ILGKEVGKGS IDLNCQPERE EEGLGVAGSS RVSMLRLLRE ANLPLETYLK  840
QQGLTSLASE GEAQNGNFAE GLYISDHQAM SDAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-673014302131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721733KRRFKTLMMRRKK
2721734KRRFKTLMMRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842484.20.0B3 domain-containing protein Os07g0679700 isoform X1
RefseqXP_020521750.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLW1P9320.0W1P932_AMBTC; Uncharacterized protein
STRINGERN041590.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]