PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00077.195 | ||||||||
Common Name | AMTR_s00077p00176570, LOC18432447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 21919.6 Da PI: 10.3859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.4e-20 | 39 | 87 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ + r++lg+f+tae Aa+a++aa+++l+g evm_27.model.AmTr_v1.0_scaffold00077.195 39 FRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDTAEAAARAYDAAARSLRG 87 8*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-13 | 38 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-37 | 38 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.696 | 38 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.58E-17 | 38 | 95 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-22 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MRKAGARGAA TADPSAAMPW PSSAAAAAGG TPKEVGIRFR GVRKRPWGRF AAEIRDPWKK 60 SRVWLGTFDT AEAAARAYDA AARSLRGPKA KTNFPLHHHP SSLPNIATTD APLPSLLPPS 120 NAAPAVSTST TLSSTVESFS RPRPPRLQSS KAPAVSQAHQ DPSHSDCDSS SSVVDDTRRP 180 LLFIDLNLPP RDEEDEELES VALRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 38 | 102 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006842613.1 | 1e-144 | ethylene-responsive transcription factor 3 | ||||
Swissprot | O80339 | 2e-34 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | W1P8P0 | 1e-142 | W1P8P0_AMBTC; Uncharacterized protein | ||||
STRING | ERN04288 | 1e-143 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 9e-26 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00077.195 |
Entrez Gene | 18432447 |
Publications ? help Back to Top | |||
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