PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.18
Common NameAMTR_s00077p00037200
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family E2F/DP
Protein Properties Length: 304aa    MW: 33623.8 Da    PI: 6.6963
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.18genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27127209271
                                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLe 54 
                                              ++++Lr+++++   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+
  evm_27.model.AmTr_v1.0_scaffold00077.18 127 TGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEftnlggslatpdqqqyDEKNIRRRVYDALNVLM 193
                                              689********...*****999************************************************ PP

                                  E2F_TDP  55 alnliekkekneirwkg 71 
                                              a+++i+k +k+ei+wkg
  evm_27.model.AmTr_v1.0_scaffold00077.18 194 AMDIISK-DKKEIQWKG 209
                                              *******.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.5E-10726303IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.1E-45122214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-32126209IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-25129209IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.3E-21129210IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.63E-34214302IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.32E-31215302No hitNo description
SMARTSM011382.6E-34216303IPR014889Transcription factor DP, C-terminal
PfamPF087813.7E-29217302IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYLNTNVPPT HLVLQSSLWF PGLEGMGTGE SNSLVQEDME KAPVSNSRGT TRSWGTFSSG  60
HGQSLSTSES AGSPSNRSEP AIATPATEST FMRLNHLDIQ GEDVASPGPL GGKKKKRGAR  120
AVGPDKTGRG LRQFSMRVCE KVESKGRTTY NEVADELVAE FTNLGGSLAT PDQQQYDEKN  180
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTTLNDIEE LKSERIALRS RIERKGAYLQ  240
ELEEQIVGLQ NLVRRNLQLY ESGNAPSSGV ALPFILVQTR PHATVEVEIS EDMQFVHFDF  300
NRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-35120214193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842436.30.0transcription factor-like protein DPB
SwissprotQ9FNY21e-133DPB_ARATH; Transcription factor-like protein DPB
TrEMBLW1P9280.0W1P928_AMBTC; Uncharacterized protein
STRINGERN041110.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]