PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00076.56
Common NameAMTR_s00076p00157170, LOC18432854
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 352aa    MW: 39154.7 Da    PI: 8.0567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00076.56genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-161462148
                                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                             +g+W+++Ed++l++++++ G+g +W + +++ g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00076.56 14 KGPWSPDEDLKLKEYIEKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                                             79*********************************************97 PP
2Myb_DNA-binding41.43.2e-1369111246
                                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              g ++ eEd ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00076.56  69 GEFSDEEDRIICNLFASIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                                              789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.313962IPR017930Myb domain
SuperFamilySSF466891.95E-2611109IPR009057Homeodomain-like
SMARTSM007172.3E-111364IPR001005SANT/Myb domain
PfamPF002494.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-231569IPR009057Homeodomain-like
CDDcd001671.59E-81662No hitNo description
PROSITE profilePS5129421.92863117IPR017930Myb domain
SMARTSM007171.3E-1267115IPR001005SANT/Myb domain
PfamPF002498.0E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2370117IPR009057Homeodomain-like
CDDcd001672.40E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPD EDLKLKEYIE KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC NLFASIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLFGR  120
PPTKNHHPFP SPLSSNPNSK PPFLSPPHQR PQPISYILNS SWISSSSSPS SSLVPDSVAV  180
SESGALRATE SYKSPWLGAF EGLTTSGCDQ QVFFLRPGFG GMNASEKGGY SYPNGGFLSK  240
KGDWYEDEQA VSFSDCSHQM EKAHFSNNNH AIINTKTMSD NSQQREYDMA LGDVPLTGVD  300
NPLFLQQQSA MDYSEYEGFT VWDGHYYHGI SSSNVNLSLT NNPIMNYKSD Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843016.10.0myb-related protein Myb4
TrEMBLW1PAT80.0W1PAT8_AMBTC; Uncharacterized protein
STRINGERN046910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-76myb domain protein 36
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]