PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00074.33

Common Name

AMTR_s00074p00110430

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C3H

Protein Properties

Length: 277aa MW: 29625.1 Da PI: 7.9149

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00074.33	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	75	101	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p evm_27.model.AmTr_v1.0_scaffold00074.33 75 PGQPDCVYYLRTGMCGYGSNCRFNHPP 101 5789*********************97 PP
2	zf-CCCH	37.8	3.2e-12	118	142	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++f++tGtCk+G++Ck++H+ evm_27.model.AmTr_v1.0_scaffold00074.33 118 GQPDCQYFLKTGTCKFGPTCKYHHP 142 6899********************8 PP
3	zf-CCCH	36.4	8.8e-12	163	188	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG Ck+G CkF+H++ evm_27.model.AmTr_v1.0_scaffold00074.33 163 GEKACAYYLRTGSCKFGVACKFNHPQ 188 6789********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.206	74	102	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-7	74	101	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-7	76	101	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.01E-6	79	103	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	80	101	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.732	116	144	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.5E-7	116	143	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-10	118	142	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-6	121	145	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	122	142	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.145	161	189	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	161	188	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-6	163	189	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-9	163	188	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-5	165	187	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MECGGVGEEE GKKSSVAGDA ASSLSSPMPQ NWQPHHQNAV SLSSPINHLQ EALWNLRIQG 60 HDSQERANTP YPERPGQPDC VYYLRTGMCG YGSNCRFNHP PDPRQVVLYR GELPERDGQP 120 DCQYFLKTGT CKFGPTCKYH HPSDRHESGP VPLNVSGLPV RQGEKACAYY LRTGSCKFGV 180 ACKFNHPQPA ALSPVLAVTG SSGYGSAGSS LSLPSGPPPY VGGLSAWTLP RGPYVSSPRL 240 QGSPTYMPII LSPSQGMISS PQGWSSYPVS SDTSNS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011629168.1	1e-177	zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBL	W1NPK3	0.0	W1NPK3_AMBTC; Uncharacterized protein
STRING	ERM96915	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1247	17	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	9e-66	C3H family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00074.33

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]