PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00072.131
Common NameAMTR_s00072p00182810, LOC18426513
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 500aa    MW: 57473.9 Da    PI: 10.0035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00072.131genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-1730119199
                                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                               ffkvl   d++++ rl++p  f ++++++  +s   +l+ ++g+   v+l   k+ g++++ +GWkeFv
  evm_27.model.AmTr_v1.0_scaffold00072.131  30 FFKVL--MDNFSE-RLWIPPAFQRHIEHE--SSENAILKGPNGKIRHVQL--IKTIGGMLFDDGWKEFV 91 
                                               88999..777776.6*******9888865..6778***************..999999*********** PP

                                               HHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                        B3  70 kangLkegDfvvFkldgrsefelvvkvfrk 99 
                                               ++  L+  Df+vF++dg+++f  +v++f++
  evm_27.model.AmTr_v1.0_scaffold00072.131  92 RDCCLEMEDFLVFRYDGNMQF--TVQIFDS 119
                                               *********************..****986 PP
2B350.63.6e-16392487198
                                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                               f  ++++s+v +   l +p  f +++   +++s+ +tl+++ g  W   ++y+ + ++  l +GWk F 
  evm_27.model.AmTr_v1.0_scaffold00072.131 392 FTHIMKRSNVYSGFYLHIPVWFSRKYF--PRRSQHVTLRNPFGAHWVAIYRYKESVSEGALVGGWKYFS 458
                                               7788999*******************8..568889*****************99999989999****** PP

                                               HHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                        B3  70 kangLkegDfvvFkldgrsefelvvkvfr 98 
                                                +n+L+egD +vF+l+++  +e++v++fr
  evm_27.model.AmTr_v1.0_scaffold00072.131 459 IENNLEEGDACVFELSNEGIKEMYVHIFR 487
                                               ***************999999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2225122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-2325122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.91427120IPR003340B3 DNA binding domain
CDDcd100171.03E-1729118No hitNo description
SMARTSM010191.5E-1130120IPR003340B3 DNA binding domain
PfamPF023627.8E-1530119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-23383487IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-23387489IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-20390487No hitNo description
SMARTSM010191.2E-14392489IPR003340B3 DNA binding domain
PfamPF023624.0E-15392487IPR003340B3 DNA binding domain
PROSITE profilePS5086313.874392489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MWGGRQACEQ CMEECYRKHG HKMPNKSSYF FKVLMDNFSE RLWIPPAFQR HIEHESSENA  60
ILKGPNGKIR HVQLIKTIGG MLFDDGWKEF VRDCCLEMED FLVFRYDGNM QFTVQIFDST  120
GCEKEDPFSV QNFVSERSLV EIGVTQNLVD YPVLSQLGSH KVTMRKKSRE WNVMPLKPLA  180
YDMTDDCDRT KVEETFHHKD DGGFINIDST TDIQGHLVAF DIDIGSCVPF RTKHRSPNKG  240
KQVGVSKSNM PKNEKLMDSH IGCSEGLNID PRTSVPFVSN NRLPDKRKFA KVSKTTISSQ  300
KKEKPKALHI THSEKLKIKS SSPITYISKD KLPRKNASVL KTKKSPQKKK KSVGSRVRNY  360
SNVVSARRPV TEIERQKAFA AASSFRSGKP FFTHIMKRSN VYSGFYLHIP VWFSRKYFPR  420
RSQHVTLRNP FGAHWVAIYR YKESVSEGAL VGGWKYFSIE NNLEEGDACV FELSNEGIKE  480
MYVHIFRVVE EIKPLKWAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1436049217146B3 domain-containing transcription factor VRN1
4i1k_B8e-1436049217146B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281291RLPDKRKFAKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833221.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLW1NV060.0W1NV06_AMBTC; Uncharacterized protein
STRINGERM984990.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]