PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00071.30
Common NameAMTR_s00071p00055960, LOC18448267
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 589aa    MW: 65621.9 Da    PI: 4.9233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00071.30genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.5e-5361341129
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 
                                              l+pGfrFhPtdeelv +yLk+kv g+++ + +vi+evd+yk+ PwdLp k  +k++++ewyf+++rd+ky
  evm_27.model.AmTr_v1.0_scaffold00071.30   6 LQPGFRFHPTDEELVGFYLKRKVLGRRMLF-DVIAEVDLYKHAPWDLPeKsFLKSRDREWYFYCPRDRKY 74 
                                              579************************888.99**************95346778999************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                              ++g r+nrat++gyWk+tgkd++v+   +++vg+kktLvf+ grap+ge+t+Wvmheyrle
  evm_27.model.AmTr_v1.0_scaffold00071.30  75 SNGPRTNRATETGYWKTTGKDRPVCL-ASRKVGMKKTLVFHIGRAPNGERTNWVMHEYRLE 134
                                              **************************.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-613156IPR003441NAC domain
PROSITE profilePS5100557.916156IPR003441NAC domain
PfamPF023654.3E-288133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MERLLLQPGF RFHPTDEELV GFYLKRKVLG RRMLFDVIAE VDLYKHAPWD LPEKSFLKSR  60
DREWYFYCPR DRKYSNGPRT NRATETGYWK TTGKDRPVCL ASRKVGMKKT LVFHIGRAPN  120
GERTNWVMHE YRLEDANMVD PSISQDAFVL CRLFKKSGSG PKNGAQYGAP FKEEEWDKYE  180
KMPGFEALIL ALTNQASLLP GFETHDTDTD VGARKDSGFL LGPDPQPSGI SGLVESHNTL  240
IENPLKGSDE IDNSMLEFDG ANNNSPNMNM ESPPKSAAED VGNVDGYDIY KDLGDINSQK  300
ELEGVTDSYM SSNVEDEYGL PQMIPAMEEG SYLELNDLVK PVDSDQPSFE MPSDMFDIYD  360
FYDNPTALGL FDSPVNLDAA GFCPNSENLS PLMMIEKNSV IDDKLNMVVK TGGVGDSFNW  420
ELQPEVAPST YFFKNSDKTG AGCSMQNPAT DSNHSEEEHY SIGHYLLGSI PARAASAAEY  480
PSAVSRGKFV GDAEASRKSS IHVRTGMAVT HVKLEHDLLN KCGKSNCECC NVVSKADKKY  540
VERKMRRADP KNGLTFVFIL GAASALMWVF VFVIGIKIAG YGWNHLMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51116212171NO APICAL MERISTEM PROTEIN
1ut4_B2e-51116212171NO APICAL MERISTEM PROTEIN
1ut7_A2e-51116212171NO APICAL MERISTEM PROTEIN
1ut7_B2e-51116212171NO APICAL MERISTEM PROTEIN
4dul_A2e-51116212171NAC domain-containing protein 19
4dul_B2e-51116212171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858416.10.0NAC domain-containing protein 53
TrEMBLU5DHD60.0U5DHD6_AMBTC; Uncharacterized protein
STRINGERN198830.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-80NAC domain containing protein 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]