PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00071.143
Common NameAMTR_s00071p00155560
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 292aa    MW: 32704.4 Da    PI: 7.432
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00071.143genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.17e-072172501750
                                               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                                               A+rsR RK+++i+eLe+ v +L+ e ++ ++ele
  evm_27.model.AmTr_v1.0_scaffold00071.143 217 AQRSRVRKLQYIAELERNVNALQVEGSEAASELE 250
                                               89**********************9988777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0048206265IPR004827Basic-leucine zipper domain
CDDcd147034.65E-15207256No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-5217255No hitNo description
SuperFamilySSF579594.5E-5217259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MANYRGLPHL SNWAYQGRQA HHLPPKSPTP THSSAPVDFV SHSLIGPHDH PKPMGGYKQH  60
QRTLSESFLI DEQPPWLDDL LNEPDTPIKR GTHRRSSSDS FAYNNFSNVD HMGHEESKKG  120
KLKQVPSWGS LDYDLVNSDS SRRPFVSGAW NPSYQRNVPP FRDGNMPDSS ASSCVQQEVV  180
APSGMERQEP EGSGACDQKG HMEKKDADPK RAKQQFAQRS RVRKLQYIAE LERNVNALQV  240
EGSEAASELE FCNQQHLILI LENKALKRRL DSLAQEQLLK CCGVSSHSGF E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628601.10.0uncharacterized protein At4g06598
TrEMBLU5D3160.0U5D316_AMBTC; Uncharacterized protein
STRINGERN199960.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP42521219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.23e-53bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]