PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00069.95 | ||||||||
Common Name | AMTR_s00069p00132820, LOC18447756 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 317aa MW: 34875.7 Da PI: 6.8729 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+f+taeeAa+a+++a+++l+ge evm_27.model.AmTr_v1.0_scaffold00069.95 23 RFIGVRQRP-SGRWVAEIKDSS---QRIRLWLGTFDTAEEAARAYDEAARALRGE 73 578******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-37 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.43E-32 | 23 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 23 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.376 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 24 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.2E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAKSQTTEQN STTTRTNRPS MRRFIGVRQR PSGRWVAEIK DSSQRIRLWL GTFDTAEEAA 60 RAYDEAARAL RGENARTNFT VSSPPNPNSS AIHDSFSVNN EFSSSWPGSL CSSLSLNSLK 120 AKLSKNLQNL IARTASSKSP KTRVSDHVTF ASLFQLKGLN QGSGNHEGSL WRSNIEKVVE 180 PSYVVPHRVA PEPLSLDPNS SCFKDPTSSF MDVEHDHSLV LEPDPKLELD SMGVSLGSSS 240 GTGDYEKFDM HDFFGYMSES SVDCDLSQEF GEKNLVNMGE SEEVNKSFCE SPRAGKRCKV 300 SSSVIIPPSF SVNRFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 23 | 79 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006857905.1 | 0.0 | ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | U5DD70 | 0.0 | U5DD70_AMBTC; Uncharacterized protein | ||||
STRING | ERN19372 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-17 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00069.95 |
Entrez Gene | 18447756 |
Publications ? help Back to Top | |||
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