PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00069.105 | ||||||||
Common Name | AMTR_s00069p00140780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25513.9 Da PI: 4.721 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 41 | 88 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +++g+Wv+eIr+p++ + r++lg++ t+e+Aa a++aa+ l+g evm_27.model.AmTr_v1.0_scaffold00069.105 41 FRGIR--SRSGKWVSEIREPRK---SNRIWLGTYPTPEMAASAYDAAAYFLKG 88 78995..678*********954...49*********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-26 | 40 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-27 | 40 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-17 | 40 | 98 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.704 | 40 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-16 | 41 | 98 | No hit | No description |
PRINTS | PR00367 | 3.2E-6 | 41 | 52 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-9 | 42 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 78 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSHPFSSRQV SSSQQSNRTA IGTGSDNRQD SPRSPGRHPM FRGIRSRSGK WVSEIREPRK 60 SNRIWLGTYP TPEMAASAYD AAAYFLKGSN AVLNFPESYA SLPVPASSSH ADIQAAAAAA 120 ASLRRQTNSA ASSTGPNRDR DRDRDRDLAQ NDPIVTHGSP PSAPAPASAA EGEGPFLETE 180 NVGQIQEPEF LDEEELFDMP SLIVSMAEGM LVSPPRMDPP PENDNGDSDS GGLWSYP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 38 | 99 | 12 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020531457.1 | 1e-171 | ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | U5DD81 | 1e-170 | U5DD81_AMBTC; Uncharacterized protein | ||||
STRING | ERN19382 | 1e-171 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00069.105 |
Publications ? help Back to Top | |||
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