PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00068.74 | ||||||||
Common Name | AMTR_s00068p00118480, LOC18448856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27839.4 Da PI: 8.356 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 40 | 86 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+eEde l+ ++ G g+W+t +++ g+ R++k+c++ w +yl evm_27.model.AmTr_v1.0_scaffold00068.74 40 GPWTPEEDEVLAAYIGSEGEGRWRTLPKHAGLLRCGKSCRLSWMNYL 86 79*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.5e-15 | 92 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l++++ ++lG++ W++Ia +++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00068.74 92 RGRIGADEEDLILRLYRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 137 788899****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.025 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.86E-25 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-8 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-11 | 40 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.73E-8 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 21.303 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 92 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 94 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.24E-11 | 97 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MRSPQSSVPA AAAAGRTSGR SSRGSGGPTP CCSKVGLKLG PWTPEEDEVL AAYIGSEGEG 60 RWRTLPKHAG LLRCGKSCRL SWMNYLRPCV KRGRIGADEE DLILRLYRLL GNRWSLIAGR 120 IPGRTDNEIK NYWNTHLSKK LISQGIDPRT HKPLLSSPPP DPLQIPNNKD VISPIIESSR 180 IPQNPNPSTS FPLENPLPNP NSEGLEDEDG SGNDVGLQYS CEEEFGLETT PMRAKKGVKI 240 GNPRINLGGE DEYY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-22 | 40 | 141 | 8 | 108 | B-MYB |
1h8a_C | 1e-22 | 37 | 141 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006858973.1 | 0.0 | transcription factor MYB6 | ||||
Swissprot | Q38850 | 9e-73 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | U5DDZ0 | 0.0 | U5DDZ0_AMBTC; Uncharacterized protein | ||||
STRING | ERN20440 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-71 | myb domain protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00068.74 |
Entrez Gene | 18448856 |
Publications ? help Back to Top | |||
---|---|---|---|
|