PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00068.49
Common NameAMTR_s00068p00099460, LOC18448830
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 328aa    MW: 36148.4 Da    PI: 5.8373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00068.49genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-173582148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             rg+WT+eEde lv ++++ G g+W+t +++ g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00068.49 35 RGPWTPEEDEVLVAYIAREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 82
                                             89******************************99************97 PP
2Myb_DNA-binding45.71.5e-1493133648
                                              HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00068.49  93 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEVKNFWNTHL 133
                                              89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-212684IPR009057Homeodomain-like
PROSITE profilePS5129416.0243082IPR017930Myb domain
SuperFamilySSF466892.09E-2832129IPR009057Homeodomain-like
SMARTSM007171.4E-123484IPR001005SANT/Myb domain
PfamPF002491.4E-143582IPR001005SANT/Myb domain
CDDcd001671.44E-103782No hitNo description
PROSITE profilePS5129422.39483137IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2385138IPR009057Homeodomain-like
SMARTSM007172.4E-1387135IPR001005SANT/Myb domain
CDDcd001672.28E-1193133No hitNo description
PfamPF002492.5E-1393133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRPSSSVAAA TASGRSGSRG NGGMTPCCSK VGMKRGPWTP EEDEVLVAYI AREGEGRWRT  60
LPKRAGLLRC GKSCRLRWMN YLRPCVKRGH IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR  120
TDNEVKNFWN THLSKKLISQ GINPRTHKPL LPSSPPGPLQ NPNNNMKNVI PPVVRSPQIS  180
QNPKPPHAST HFSAPLSPHP PENPNPDGNC EGFLEESGSG SEVGFQYSYD DEFDHEVTTM  240
ATENVFEMGN PNSDGGGDNE YNSEDTFSSF LDSLISGDDD FLLQEQQQLM VAPEMTMNAS  300
EPQCSYWDRT LLPTPLISDH EGPSTDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-24351374105C-Myb DNA-Binding Domain
1msf_C4e-24351374105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858948.10.0transcription factor MYB3
TrEMBLU5DDW10.0U5DDW1_AMBTC; Uncharacterized protein
STRINGERN204150.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-76myb domain protein 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]