PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00068.46
Common NameAMTR_s00068p00092800, LOC18448827
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 328aa    MW: 36105.3 Da    PI: 5.6152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00068.46genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-163582148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             rg+W++eEde lv ++++ G g+W+t +++ g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00068.46 35 RGPWSPEEDEVLVAYIAREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 82
                                             89******************************99************97 PP
2Myb_DNA-binding45.51.7e-1493133648
                                              HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00068.46  93 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNFWNTHL 133
                                              89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-202684IPR009057Homeodomain-like
PROSITE profilePS5129415.5813082IPR017930Myb domain
SuperFamilySSF466893.75E-2832129IPR009057Homeodomain-like
SMARTSM007172.8E-123484IPR001005SANT/Myb domain
PfamPF002493.2E-143582IPR001005SANT/Myb domain
CDDcd001673.03E-103782No hitNo description
PROSITE profilePS5129422.49283137IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2385138IPR009057Homeodomain-like
SMARTSM007172.6E-1387135IPR001005SANT/Myb domain
CDDcd001672.15E-1193133No hitNo description
PfamPF002492.5E-1393133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRPSSSVAAA TASGRSGSRG NGGVTPCCSK VGMKRGPWSP EEDEVLVAYI AREGEGRWRT  60
LPKRAGLLRC GKSCRLRWMN YLRPCVKRGH IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR  120
TDNEIKNFWN THLSKKLISQ GIDPKTHKPL LPSSPPGPLQ NPNNNMKNVI PPVVRSPQIS  180
QNPKPPHAST HFSAPLSPHP PENPNPDGNC EGFLEESGSG SEVGFQYSYD DEFDHEVTTM  240
ATENVFEMGN PNSDGGGDNE YNSEDTFSSF LDCLISGDDD FLLQEQQQLM VAPEMTMNAS  300
EPQCSYWDRT LLPTPLISDH EGPSTDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-24351374105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-24351374105C-Myb DNA-Binding Domain
1msf_C6e-24351374105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858945.10.0transcription factor MYB3
TrEMBLU5DG120.0U5DG12_AMBTC; Uncharacterized protein
STRINGERN204120.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-76myb domain protein 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]