PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00068.186
Common NameAMTR_s00068p00207380
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 334aa    MW: 38505 Da    PI: 7.1242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00068.186genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.13.9e-54101391128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdk 66 
                                               +ppGfrFhPtdeel+ +yLkkkv+ ++++l +vi++vd++k+ePwdL+ k ++ +  ++ewyfFs++dk
  evm_27.model.AmTr_v1.0_scaffold00068.186  10 VPPGFRFHPTDEELLYYYLKKKVNYEDIDL-DVIRDVDLNKLEPWDLKdKcRIGNgPQNEWYFFSHKDK 77 
                                               69****************************.9***************943444442556********** PP

                                       NAM  67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               ky+tg+r+nrat++g+Wkatg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  evm_27.model.AmTr_v1.0_scaffold00068.186  78 KYPTGTRTNRATTAGFWKATGRDKAIHMSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                                               ************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-606159IPR003441NAC domain
PROSITE profilePS5100558.03610159IPR003441NAC domain
PfamPF023652.4E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MITGSGHVSV PPGFRFHPTD EELLYYYLKK KVNYEDIDLD VIRDVDLNKL EPWDLKDKCR  60
IGNGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHMSNSKR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDFSDTQEDG WVVCRVFKKK NQQRVLHFEN PPEDEGLCPN  180
SSAYHEKPHG PHSLDQKHAF HMHQDFPYDH QSNTHHNINS SDHHHPNNFN NSMHLPQLLS  240
PDNGVTPYLA PSVSINMVDI ECSQNLMKLT SNGAMQQQDW SFLDRLLASH PNLDLFSNGK  300
TTPPPQLFDA NTSIQKFPFH YLGCDPDALK FSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-51716114167NO APICAL MERISTEM PROTEIN
1ut4_B7e-51716114167NO APICAL MERISTEM PROTEIN
1ut7_A7e-51716114167NO APICAL MERISTEM PROTEIN
1ut7_B7e-51716114167NO APICAL MERISTEM PROTEIN
3swm_A8e-51716117170NAC domain-containing protein 19
3swm_B8e-51716117170NAC domain-containing protein 19
3swm_C8e-51716117170NAC domain-containing protein 19
3swm_D8e-51716117170NAC domain-containing protein 19
3swp_A8e-51716117170NAC domain-containing protein 19
3swp_B8e-51716117170NAC domain-containing protein 19
3swp_C8e-51716117170NAC domain-containing protein 19
3swp_D8e-51716117170NAC domain-containing protein 19
4dul_A7e-51716114167NAC domain-containing protein 19
4dul_B7e-51716114167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532124.10.0NAC domain-containing protein 76
RefseqXP_020532125.10.0NAC domain-containing protein 76
RefseqXP_020532126.10.0NAC domain-containing protein 76
SwissprotQ9MA171e-116SMB_ARATH; Protein SOMBRERO
TrEMBLU5DGG10.0U5DGG1_AMBTC; Uncharacterized protein
STRINGERN205520.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-90NAC family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  3. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  4. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  5. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]