PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00067.40 | ||||||||
Common Name | AMTR_s00067p00064350, LOC18447144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 28253.3 Da PI: 5.6268 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.5 | 3.2e-50 | 10 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 lppGfrF P+d+elv++yL++kve+ + + ++ evd++++ePw+Lp +++ + kewyfF+ rd+kyat evm_27.model.AmTr_v1.0_scaffold00067.40 10 LPPGFRFYPRDDELVCYYLCNKVEKLPSLC--TMVEVDLHNCEPWELPDAAELSPKEWYFFTIRDRKYAT 77 79***********************99655..69**************88888999************** PP NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g r nrat++gyWkatgkd++v++ +++ vg++ktLvfy+grap+g ktdWvmhe+rl evm_27.model.AmTr_v1.0_scaffold00067.40 78 GFRMNRATSAGYWKATGKDRPVIEDaTQSPVGMRKTLVFYRGRAPNGCKTDWVMHEFRL 136 ***********************9866777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-57 | 9 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.408 | 10 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSLKGIEGKL PPGFRFYPRD DELVCYYLCN KVEKLPSLCT MVEVDLHNCE PWELPDAAEL 60 SPKEWYFFTI RDRKYATGFR MNRATSAGYW KATGKDRPVI EDATQSPVGM RKTLVFYRGR 120 APNGCKTDWV MHEFRLDNSE FPPKEDWVLC KVFHKNRGEH VKVSMDMGKG NGHMGCPCIP 180 GYSYSSPNLE QDLLNLDGCH QVSCFSNLSC PLEETPNTQL NLAELHYNFM EFAQLEDPML 240 CNEIVP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-47 | 7 | 156 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006857308.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 7e-64 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | U5D968 | 0.0 | U5D968_AMBTC; Uncharacterized protein | ||||
STRING | ERN18775 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-76 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00067.40 |
Entrez Gene | 18447144 |