PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00066.6
Common NameAMTR_s00066p00028460
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 788aa    MW: 85028.1 Da    PI: 6.8749
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00066.6genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-11301357155
                                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                             s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00066.6 301 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 357
                                             57*******************4444.2455535555.779999**************98 PP
2AP246.59.3e-15400451155
                                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm_27.model.AmTr_v1.0_scaffold00066.6 400 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 451
                                             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.87E-19301367No hitNo description
PfamPF008471.4E-8301357IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14301367IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-12302366IPR001471AP2/ERF domain
PROSITE profilePS5103217.319302365IPR001471AP2/ERF domain
SMARTSM003801.1E-22302371IPR001471AP2/ERF domain
PRINTSPR003674.6E-6303314IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17400461IPR016177DNA-binding domain
PfamPF008471.2E-9400451IPR001471AP2/ERF domain
CDDcd000181.96E-24400461No hitNo description
PROSITE profilePS5103219.045401459IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18401460IPR001471AP2/ERF domain
SMARTSM003801.5E-33401465IPR001471AP2/ERF domain
PRINTSPR003674.6E-6441461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MSSSINNWLG FSLSPQQQQQ QQQSSDHSQS QQHHHSGFAS SFNNNNDLSV SGEGGDCYMG  60
LGGGDSQATT LSRPDGPFGI LEALNRPHQN QDWSVKSLSV GIINSDSSCY GGGGGGTTTN  120
VIAERQHQDG VGRPKLEDFL GGASLGGGGG GSTTHYTGGG ENNNNNNNML FSMDCSLQLP  180
SNGNGNNSSS SSMLGLSMIK TWLRNQPHSS STENDGGGAA VSNTHQTLSL SMGTGGGSTH  240
HQQQQGPIQI PLPLPAPMAV PGESSSSDNN VKQQKPPPLD QAGAIEPVPR KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGTTT  360
TTNFPISNYE KEVEEMKHMT RQEYVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVNSIME SSTLPIGGAA  480
KRLKESSDQT TNHPMPLPLP LPLGESTMPM PMAMPMAMPL PMSMRRATDE DNIISMANAA  540
ASHMTTNEGI ATAAGYGWPI LGFHHQPLTT QHFPYSHSQN PQQRGGWCKS ERQQHEESNS  600
NSNSSNIMQE AHQLHLGGGS NNTHNFLQQQ ASVLHNLISL DSPSSFDQTS ASNSIIYTGS  660
SGYQLGGPIG TTIIPTGVNP HVADHHQGSL GEGETKQLGF YENGYLSVAA DPYSAGARNV  720
YYLQQNQSKA NNNGNYDDDS HHQTNNNNIS SWMIPTTSLQ ALAPTRSSSN LAAVCHATPI  780
FSVWNDT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628753.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-140BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLU5DD110.0U5DD11_AMBTC; Uncharacterized protein
STRINGERN200900.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-121AP2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]