PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00066.150

Common Name

AMTR_s00066p00148680, LOC18448644

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Nin-like

Protein Properties

Length: 1026aa MW: 113580 Da PI: 6.547

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00066.150	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	632	682	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ evm_27.model.AmTr_v1.0_scaffold00066.150 632 ERNISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 682 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	614	702	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	634	682	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.52E-22	923	1011	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-21	924	1006	No hit	No description
PROSITE profile	PS51745	23.809	927	1009	IPR000270	PB1 domain
SMART	SM00666	3.2E-17	927	1009	IPR000270	PB1 domain
CDD	cd06407	2.63E-30	928	1008	No hit	No description
Pfam	PF00564	1.2E-15	928	1008	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1026 aa Download sequence Send to blast
MDHLFVHRAP GTGPWCSSQG VPSVPDNMGV EDSFSFSEIM DFDSYVEPSV AGDQVSPVYG 60 FNNSYPIGDV PTYYAPVSSN PNSNPATGNS LVGFGVPLEY RDPVTNPTAS FYPRPFSPEE 120 EVIAGAPYFK TNTKSDAYDR KNTYQYVYKS PVDPTKASCY RPSVRQEGDN GSNCGSFVGQ 180 SEHEEILKRN INTKEWMVKQ MDSRQNFTIP RSPGLILSEK LLKALSLFRG YCGGNILAQV 240 WMPVRQGDQY VLTTCEQPYL LDQILAGYRE VSRGFFFSAK GTEGAFPGLP GRVFISGLPE 300 WTPDVSYYKR AEYLRADHAR RNEVHGSLAL PVFEPHDSSC LAVLELVTTK KKASFGEEME 360 NICHALQAVN LRSREAKVHF QIISENRKAA LAEILDLLRA VCHAHKLPLA QTWTPCKQKF 420 MPRLEDGETL EKVLLSIEKS ACYANDPQLD GFMDACAENH LEKGRGIVGK ALQSNKPFFS 480 KDVKEYDILE YPLAHHARRF ALCAAVAIRL RSSHTSDDDY VLEFFLPLNC TGSLEQQLVL 540 NNLSSTIQRI CRSLRTVSEA ELAECNTVGV FGKDERKSSS LMGMHGKCSD PPLSKAMGIQ 600 NPVLDKVEGD VDHEQTTTDS KRQFERKRNT AERNISLSVL QQYFSGSLKD AAKSIGVCPT 660 TLKRICRQHG ISRWPSRKIN KVNRSLRKLQ IVIDSVQGAE GSLKFDVLTG GFVTGASKLH 720 DGDNQIPFST SPKSSPIVLL NVTPKKKVRE EAASSIEEIR KSEINFQSLH SNKTELSGTP 780 SLPMAFKIEK DPVSVSPIGV IDEPKAATSF CSGLEQMPWA FSQTNLRSSF VGRETCERMD 840 TNKDHMSIES SECLIRTRSS SSLAAVDELE NGVYAMDGMV ENNQPSSSGM TDSSNSSGSM 900 INGSATSSPT MPVSCKSKVY LRDGSSRVTV KATYKDDVVR FKFLPCLGYF QLFEEVGRRF 960 KLSIGTFQLK YLDDEEEWVL LMNDSDLNEC LEILESYGAH SVKLMVRDLP CVMGSSEGST 1020 CAPLG*

Sequence ? help Back to Top

Protein Sequence Length: 1026 aa Download sequence Send to blast

MDHLFVHRAP GTGPWCSSQG VPSVPDNMGV EDSFSFSEIM DFDSYVEPSV AGDQVSPVYG  60
FNNSYPIGDV PTYYAPVSSN PNSNPATGNS LVGFGVPLEY RDPVTNPTAS FYPRPFSPEE  120
EVIAGAPYFK TNTKSDAYDR KNTYQYVYKS PVDPTKASCY RPSVRQEGDN GSNCGSFVGQ  180
SEHEEILKRN INTKEWMVKQ MDSRQNFTIP RSPGLILSEK LLKALSLFRG YCGGNILAQV  240
WMPVRQGDQY VLTTCEQPYL LDQILAGYRE VSRGFFFSAK GTEGAFPGLP GRVFISGLPE  300
WTPDVSYYKR AEYLRADHAR RNEVHGSLAL PVFEPHDSSC LAVLELVTTK KKASFGEEME  360
NICHALQAVN LRSREAKVHF QIISENRKAA LAEILDLLRA VCHAHKLPLA QTWTPCKQKF  420
MPRLEDGETL EKVLLSIEKS ACYANDPQLD GFMDACAENH LEKGRGIVGK ALQSNKPFFS  480
KDVKEYDILE YPLAHHARRF ALCAAVAIRL RSSHTSDDDY VLEFFLPLNC TGSLEQQLVL  540
NNLSSTIQRI CRSLRTVSEA ELAECNTVGV FGKDERKSSS LMGMHGKCSD PPLSKAMGIQ  600
NPVLDKVEGD VDHEQTTTDS KRQFERKRNT AERNISLSVL QQYFSGSLKD AAKSIGVCPT  660
TLKRICRQHG ISRWPSRKIN KVNRSLRKLQ IVIDSVQGAE GSLKFDVLTG GFVTGASKLH  720
DGDNQIPFST SPKSSPIVLL NVTPKKKVRE EAASSIEEIR KSEINFQSLH SNKTELSGTP  780
SLPMAFKIEK DPVSVSPIGV IDEPKAATSF CSGLEQMPWA FSQTNLRSSF VGRETCERMD  840
TNKDHMSIES SECLIRTRSS SSLAAVDELE NGVYAMDGMV ENNQPSSSGM TDSSNSSGSM  900
INGSATSSPT MPVSCKSKVY LRDGSSRVTV KATYKDDVVR FKFLPCLGYF QLFEEVGRRF  960
KLSIGTFQLK YLDDEEEWVL LMNDSDLNEC LEILESYGAH SVKLMVRDLP CVMGSSEGST  1020
CAPLG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006858767.1	0.0	protein NLP9
TrEMBL	U5DCH8	0.0	U5DCH8_AMBTC; Uncharacterized protein
STRING	ERN20234	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00066.150
Entrez Gene	18448644

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]