PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.42
Common NameAMTR_s00065p00077750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 646aa    MW: 71668 Da    PI: 7.4019
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.42genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12306362155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00065.42 306 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 362
                                              78*******************77776664346655.77******************98 PP
2AP245.71.6e-14407456355
                                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm_27.model.AmTr_v1.0_scaffold00065.42 407 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 456
                                              9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-14306371IPR016177DNA-binding domain
CDDcd000181.85E-18306370No hitNo description
PfamPF008471.2E-9306362IPR001471AP2/ERF domain
SMARTSM003801.4E-21307376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-12307370IPR001471AP2/ERF domain
PROSITE profilePS5103216.937307370IPR001471AP2/ERF domain
PRINTSPR003674.0E-6308319IPR001471AP2/ERF domain
CDDcd000185.34E-25405466No hitNo description
SuperFamilySSF541711.44E-17405466IPR016177DNA-binding domain
SMARTSM003807.5E-34406470IPR001471AP2/ERF domain
PROSITE profilePS5103219.177406464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-18406464IPR001471AP2/ERF domain
PfamPF008472.8E-9407456IPR001471AP2/ERF domain
PRINTSPR003674.0E-6446466IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MKSMNNWLGF SLSPQLPLEV QADAHQSQPA TTVPTSFFLS PHLNPSGICY GVDAEHGGYY  60
SQMSSMPLKS DGSLCIMEAL SRSHPEGMVP SSSPKLEDFM GTQQYSHDRE SMALSLDSNV  120
YFQQNPHHEN TRNAMNLQHL RNVQFHHPSF QPLQGAICST MGGPVMYQSP PLEEQAKETP  180
LLENCSLQLP TMAEDGLSGL KSWVRHFTTA SPMDHQKMNM GGDENGNGSV SSTMNPIGYG  240
DLQSLSLSMS PGSQSSCVTA PPQQMANNGV VECSVAMDSR KRAGGKLVQK QPVHRKSIET  300
FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ GGYDMEEKAA RAYDLAALKY  360
WGPSTHINFA LTNYQEELEE MKNMSRQEYV AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ  420
ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDISRYDV ERITASNTLL  480
AGEQAKRIKG RETQERETLE RETHERIDEN QAIICRQNSV GDPSIPDGST SQASTVQKLD  540
QKLISYRNPY LSSNLHDIVT MDSLNSGERI EDSNRFMSHL SNSSSMVTSL GSSGGEDPRQ  600
GSPDKSNGLS MIFSKPKFMG SAPISTWRPS IPMAHIPVFA AWTDT*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628066.20.0AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_020530935.10.0AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_020530936.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-145CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLU5DDS30.0U5DDS3_AMBTC; Uncharacterized protein
STRINGERN185380.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-121AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]